Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNQ1DN (KCNQ1 downstream neighbor (non-protein coding))

Identity

Alias_namesKCNQ1 downstream neighbor
Alias_symbol (synonym)BWRT
HSA404617
Other alias
HGNC (Hugo) KCNQ1DN
LocusID (NCBI) 55539
Atlas_Id 64806
Location 11_KI270831v1_alt  [Link to chromosome band 11]
Location_base_pair Starts at 102234 and ends at 104281 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNQ1DN   13335
Cards
Entrez_Gene (NCBI)KCNQ1DN  55539  KCNQ1 downstream neighbor (non-protein coding)
AliasesBWRT; HSA404617
GeneCards (Weizmann)KCNQ1DN
Ensembl hg19 (Hinxton)ENSG00000237941 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237941 [Gene_View]  chr11_KI270831v1_alt:102234-104281 [Contig_View]  KCNQ1DN [Vega]
ICGC DataPortalENSG00000237941
TCGA cBioPortalKCNQ1DN
AceView (NCBI)KCNQ1DN
Genatlas (Paris)KCNQ1DN
WikiGenes55539
SOURCE (Princeton)KCNQ1DN
Genetics Home Reference (NIH)KCNQ1DN
Genomic and cartography
GoldenPath hg38 (UCSC)KCNQ1DN  -     chr11_KI270831v1_alt:102234-104281 +  11_KI270831v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCNQ1DN  -     11_KI270831v1_alt   [Description]    (hg19-Feb_2009)
EnsemblKCNQ1DN - 11_KI270831v1_alt [CytoView hg19]  KCNQ1DN - 11_KI270831v1_alt [CytoView hg38]
Mapping of homologs : NCBIKCNQ1DN [Mapview hg19]  KCNQ1DN [Mapview hg38]
OMIM610980   
Gene and transcription
Genbank (Entrez)AB039920 AJ404617 BC098159 BC098256 BC098319
RefSeq transcript (Entrez)NM_018722
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_187585
Consensus coding sequences : CCDS (NCBI)KCNQ1DN
Cluster EST : UnigeneHs.127821 [ NCBI ]
CGAP (NCI)Hs.127821
Alternative Splicing GalleryENSG00000237941
Gene ExpressionKCNQ1DN [ NCBI-GEO ]   KCNQ1DN [ EBI - ARRAY_EXPRESS ]   KCNQ1DN [ SEEK ]   KCNQ1DN [ MEM ]
Gene Expression Viewer (FireBrowse)KCNQ1DN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55539
GTEX Portal (Tissue expression)KCNQ1DN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H478   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H478  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H478
Splice isoforms : SwissVarQ9H478
PhosPhoSitePlusQ9H478
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KCNQ1DN
DMDM Disease mutations55539
Blocks (Seattle)KCNQ1DN
SuperfamilyQ9H478
Human Protein AtlasENSG00000237941
Peptide AtlasQ9H478
HPRD17174
IPIIPI00000046   
Protein Interaction databases
DIP (DOE-UCLA)Q9H478
IntAct (EBI)Q9H478
FunCoupENSG00000237941
BioGRIDKCNQ1DN
STRING (EMBL)KCNQ1DN
ZODIACKCNQ1DN
Ontologies - Pathways
QuickGOQ9H478
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkKCNQ1DN
Atlas of Cancer Signalling NetworkKCNQ1DN
Wikipedia pathwaysKCNQ1DN
Orthology - Evolution
OrthoDB55539
GeneTree (enSembl)ENSG00000237941
Phylogenetic Trees/Animal Genes : TreeFamKCNQ1DN
HOVERGENQ9H478
HOGENOMQ9H478
Homologs : HomoloGeneKCNQ1DN
Homology/Alignments : Family Browser (UCSC)KCNQ1DN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNQ1DN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNQ1DN
dbVarKCNQ1DN
ClinVarKCNQ1DN
1000_GenomesKCNQ1DN 
Exome Variant ServerKCNQ1DN
ExAC (Exome Aggregation Consortium)KCNQ1DN (select the gene name)
Genetic variants : HAPMAP55539
Genomic Variants (DGV)KCNQ1DN [DGVbeta]
DECIPHERKCNQ1DN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCNQ1DN 
Mutations
ICGC Data PortalKCNQ1DN 
TCGA Data PortalKCNQ1DN 
Broad Tumor PortalKCNQ1DN
OASIS PortalKCNQ1DN [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDKCNQ1DN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNQ1DN
DgiDB (Drug Gene Interaction Database)KCNQ1DN
DoCM (Curated mutations)KCNQ1DN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNQ1DN (select a term)
intoGenKCNQ1DN
Cancer3DKCNQ1DN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610980   
Orphanet
MedgenKCNQ1DN
Genetic Testing Registry KCNQ1DN
NextProtQ9H478 [Medical]
TSGene55539
GENETestsKCNQ1DN
Target ValidationKCNQ1DN
Huge Navigator KCNQ1DN [HugePedia]
snp3D : Map Gene to Disease55539
BioCentury BCIQKCNQ1DN
ClinGenKCNQ1DN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55539
Chemical/Pharm GKB GenePA134924946
Clinical trialKCNQ1DN
Miscellaneous
canSAR (ICR)KCNQ1DN (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNQ1DN
EVEXKCNQ1DN
GoPubMedKCNQ1DN
iHOPKCNQ1DN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:54:13 CEST 2017

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