Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNQ1OT1 (KCNQ1 opposite strand/antisense transcript 1 (non-protein coding))

Identity

Other namesKCNQ1-AS2
KCNQ10T1
Kncq1
KvDMR1
KvLQT1-AS
LIT1
NCRNA00012
HGNC (Hugo) KCNQ1OT1
LocusID (NCBI) 10984
Atlas_Id 307
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 2629558 and ends at 2721228 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 1 ]
  Beckwith-Wiedemann syndrome

External links

Nomenclature
HGNC (Hugo)KCNQ1OT1   6295
Cards
Entrez_Gene (NCBI)KCNQ1OT1  10984  KCNQ1 opposite strand/antisense transcript 1 (non-protein coding)
AliasesKCNQ1-AS2; KCNQ10T1; Kncq1; KvDMR1; 
KvLQT1-AS; LIT1; NCRNA00012
GeneCards (Weizmann)KCNQ1OT1
Ensembl hg19 (Hinxton)ENSG00000269821 [Gene_View]  chr11:2629558-2721228 [Contig_View]  KCNQ1OT1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000269821 [Gene_View]  chr11:2629558-2721228 [Contig_View]  KCNQ1OT1 [Vega]
ICGC DataPortalENSG00000269821
TCGA cBioPortalKCNQ1OT1
AceView (NCBI)KCNQ1OT1
Genatlas (Paris)KCNQ1OT1
WikiGenes10984
SOURCE (Princeton)KCNQ1OT1
Genomic and cartography
GoldenPath hg19 (UCSC)KCNQ1OT1  -     chr11:2629558-2721228 -  11p15.5   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KCNQ1OT1  -     11p15.5   [Description]    (hg38-Dec_2013)
EnsemblKCNQ1OT1 - 11p15.5 [CytoView hg19]  KCNQ1OT1 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIKCNQ1OT1 [Mapview hg19]  KCNQ1OT1 [Mapview hg38]
OMIM130650   604115   
Gene and transcription
Genbank (Entrez)AA155694 AF086011 AK123073 HG503450 HG975405
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_008935 NG_016178 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)KCNQ1OT1
Cluster EST : UnigeneHs.741312 [ NCBI ]
CGAP (NCI)Hs.741312
Alternative Splicing GalleryENSG00000269821
Gene ExpressionKCNQ1OT1 [ NCBI-GEO ]   KCNQ1OT1 [ EBI - ARRAY_EXPRESS ]   KCNQ1OT1 [ SEEK ]   KCNQ1OT1 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNQ1OT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)10984
GTEX Portal (Tissue expression)KCNQ1OT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations10984
Blocks (Seattle)KCNQ1OT1
Human Protein AtlasENSG00000269821
IPIIPI00847268   
Protein Interaction databases
FunCoupENSG00000269821
BioGRIDKCNQ1OT1
STRING (EMBL)KCNQ1OT1
ZODIACKCNQ1OT1
Ontologies - Pathways
Huge Navigator KCNQ1OT1 [HugePedia]
snp3D : Map Gene to Disease10984
BioCentury BCIQKCNQ1OT1
ClinGenKCNQ1OT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10984
Chemical/Pharm GKB GenePA30073
Clinical trialKCNQ1OT1
Miscellaneous
canSAR (ICR)KCNQ1OT1 (select the gene name)
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNQ1OT1
EVEXKCNQ1OT1
GoPubMedKCNQ1OT1
iHOPKCNQ1OT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 19 18:56:05 CEST 2016

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