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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

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KCNQ1OT1 (KCNQ1 opposite strand/antisense transcript 1 (non-protein coding))

Identity

Other namesKCNQ1-AS2
KCNQ10T1
KvDMR1
KvLQT1-AS
LIT1
NCRNA00012
HGNC (Hugo) KCNQ1OT1
LocusID (NCBI) 10984
Location 11p15.5
Location_base_pair Starts at 2629558 and ends at 2721228 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KCNQ1OT1   6295
Cards
Entrez_Gene (NCBI)KCNQ1OT1  10984  KCNQ1 opposite strand/antisense transcript 1 (non-protein coding)
GeneCards (Weizmann)KCNQ1OT1
Ensembl hg19 (Hinxton)ENSG00000269821 [Gene_View]  chr11:2629558-2721228 [Contig_View]  KCNQ1OT1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000269821 [Gene_View]  chr11:2629558-2721228 [Contig_View]  KCNQ1OT1 [Vega]
ICGC DataPortalENSG00000269821
cBioPortalKCNQ1OT1
AceView (NCBI)KCNQ1OT1
Genatlas (Paris)KCNQ1OT1
WikiGenes10984
SOURCE (Princeton)KCNQ1OT1
Genomic and cartography
GoldenPath hg19 (UCSC)KCNQ1OT1  -     chr11:2629558-2721228 -  11p15.5   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KCNQ1OT1  -     11p15.5   [Description]    (hg38-Dec_2013)
EnsemblKCNQ1OT1 - 11p15.5 [CytoView hg19]  KCNQ1OT1 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIKCNQ1OT1 [Mapview hg19]  KCNQ1OT1 [Mapview hg38]
OMIM130650   604115   
Gene and transcription
Genbank (Entrez)AA155694 AF086011 AK123073
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_008935 NG_016178 NT_009237 NW_001838018 NW_004929378
Consensus coding sequences : CCDS (NCBI)KCNQ1OT1
Cluster EST : UnigeneHs.741312 [ NCBI ]
CGAP (NCI)Hs.741312
Alternative Splicing : Fast-db (Paris)GSHG0033804
Alternative Splicing GalleryENSG00000269821
Gene ExpressionKCNQ1OT1 [ NCBI-GEO ]     KCNQ1OT1 [ SEEK ]   KCNQ1OT1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations10984
Human Protein AtlasENSG00000269821
IPIIPI00847268   
Protein Interaction databases
FunCoupENSG00000269821
BioGRIDKCNQ1OT1
IntegromeDBKCNQ1OT1
STRING (EMBL)KCNQ1OT1
Ontologies - Pathways
Litterature
PubMed46 Pubmed reference(s) in Entrez
CoreMineKCNQ1OT1
GoPubMedKCNQ1OT1
iHOPKCNQ1OT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 16:25:16 CET 2015

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