Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNQ1OT1 (KCNQ1 opposite strand/antisense transcript 1 (non-protein coding))

Identity

Other namesKCNQ1-AS2
KCNQ10T1
KvDMR1
KvLQT1-AS
LIT1
NCRNA00012
HGNC (Hugo) KCNQ1OT1
LocusID (NCBI) 10984
Location 11p15.5
Location_base_pair Starts at 2629558 and ends at 2721228 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KCNQ1OT1   6295
Cards
Entrez_Gene (NCBI)KCNQ1OT1  10984  KCNQ1 opposite strand/antisense transcript 1 (non-protein coding)
GeneCards (Weizmann)KCNQ1OT1
Ensembl (Hinxton)ENSG00000269821 [Gene_View]  chr11:2629558-2721228 [Contig_View]  KCNQ1OT1 [Vega]
ICGC DataPortalENSG00000269821
cBioPortalKCNQ1OT1
AceView (NCBI)KCNQ1OT1
Genatlas (Paris)KCNQ1OT1
WikiGenes10984
SOURCE (Princeton)
Genomic and cartography
GoldenPath (UCSC)KCNQ1OT1  -  11p15.5   chr11:2629558-2721228 -  11p15.5   [Description]    (hg19-Feb_2009)
EnsemblKCNQ1OT1 - 11p15.5 [CytoView]
Mapping of homologs : NCBIKCNQ1OT1 [Mapview]
OMIM130650   604115   
Gene and transcription
Genbank (Entrez)AA155694 AF086011 AK123073
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_008935 NG_016178 NT_009237 NW_001838018 NW_004929378
Consensus coding sequences : CCDS (NCBI)KCNQ1OT1
Cluster EST : UnigeneHs.741312 [ NCBI ]
CGAP (NCI)Hs.741312
Alternative Splicing : Fast-db (Paris)GSHG0033804
Alternative Splicing GalleryENSG00000269821
Gene ExpressionKCNQ1OT1 [ NCBI-GEO ]     KCNQ1OT1 [ SEEK ]   KCNQ1OT1 [ MEM ]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations10984
Human Protein AtlasENSG00000269821 [gene] [tissue] [antibody] [cell] [cancer]
IPIIPI00847268   
Protein Interaction databases
FunCoupENSG00000269821
BioGRIDKCNQ1OT1
IntegromeDBKCNQ1OT1
STRING (EMBL)KCNQ1OT1
Ontologies - Pathways
Ontology : AmiGO
Ontology : EGO-EBI
Protein Interaction DatabaseKCNQ1OT1
Wikipedia pathwaysKCNQ1OT1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)KCNQ1OT1
snp3D : Map Gene to Disease10984
SNP (GeneSNP Utah)KCNQ1OT1
SNP : HGBaseKCNQ1OT1
Genetic variants : HAPMAPKCNQ1OT1
Exome VariantKCNQ1OT1
1000_GenomesKCNQ1OT1 
ICGC programENSG00000269821 
Mutations and Diseases : HGMDKCNQ1OT1
Genomic VariantsKCNQ1OT1  KCNQ1OT1 [DGVbeta]
dbVarKCNQ1OT1
ClinVarKCNQ1OT1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM130650    604115   
MedgenKCNQ1OT1
GENETestsKCNQ1OT1
Disease Genetic AssociationKCNQ1OT1
Huge Navigator KCNQ1OT1 [HugePedia]  KCNQ1OT1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneKCNQ1OT1
Homology/Alignments : Family Browser (UCSC)KCNQ1OT1
Phylogenetic Trees/Animal Genes : TreeFamKCNQ1OT1
Chemical/Protein Interactions : CTD10984
Chemical/Pharm GKB GenePA30073
Clinical trialKCNQ1OT1
Cancer Resource (Charite)ENSG00000269821
Other databases
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
CoreMineKCNQ1OT1
iHOPKCNQ1OT1
OncoSearchKCNQ1OT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 14:00:49 CEST 2014

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