Atlas of Genetics and Cytogenetics in Oncology and Haematology

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KCNQ1OT1 (KCNQ1 opposite strand/antisense transcript 1 (non-protein coding))

Identity

Other namesKCNQ1-AS2
KCNQ10T1
KvDMR1
KvLQT1-AS
LIT1
NCRNA00012
HGNC (Hugo) KCNQ1OT1
LocusID (NCBI) 10984
Location 11p15.5
Location_base_pair Starts at 2629558 and ends at 2721228 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KCNQ1OT1   6295
Entrez_Gene (NCBI)KCNQ1OT1  10984  KCNQ1 opposite strand/antisense transcript 1 (non-protein coding)
Cards
GeneCards (Weizmann)KCNQ1OT1
Ensembl (Hinxton) [Gene_View]  chr11:2629558-2721228 [Contig_View]  KCNQ1OT1 [Vega]
AceView (NCBI)KCNQ1OT1
Genatlas (Paris)KCNQ1OT1
SOURCE (Stanford)
Genomic and cartography
GoldenPath (UCSC)KCNQ1OT1  -  11p15.5   chr11:2629558-2721228 -  11p15.5   [Description]    (hg19-Feb_2009)
EnsemblKCNQ1OT1 - 11p15.5 [CytoView]
Mapping of homologs : NCBIKCNQ1OT1 [Mapview]
OMIM130650   604115   
Gene and transcription
Genbank (Entrez)AA155694 AF086011 AK123073
RefSeq transcript (SRS)
RefSeq transcript (Entrez)
RefSeq genomic (SRS)AC_000143 NC_000011 NC_018922 NG_008935 NG_016178 NT_009237 NW_001838018 NW_004078070
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_008935 NG_016178 NT_009237 NW_001838018 NW_004078070
Consensus coding sequences : CCDS (NCBI)KCNQ1OT1
Cluster EST : UnigeneHs.741312 [ SRS ] Hs.741312 [ NCBI ]
CGAP (NCI)Hs.741312
Alternative Splicing : Fast-db (Paris)GSHG0033804
Gene ExpressionKCNQ1OT1 [ NCBI-GEO ]   KCNQ1OT1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM10984
IPIIPI00847268   
Protein Interaction databases
REACTOMEKCNQ1OT1
Protein Interaction Database10984
BioGRIDKCNQ1OT1
IntegromeDBKCNQ1OT1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)KCNQ1OT1
SNP (GeneSNP Utah)KCNQ1OT1
SNP : HGBaseKCNQ1OT1
Genetic variants : HAPMAPKCNQ1OT1
Mutations and Diseases : HGMDKCNQ1OT1
OMIM130650    604115   
GENETests130650    604115   
Disease Genetic AssociationKCNQ1OT1
Huge Navigator KCNQ1OT1 [HugePedia]  KCNQ1OT1 [HugeCancerGEM]
Genomic VariantsKCNQ1OT1  KCNQ1OT1 [DGVbeta]
snp3D : Map Gene to Disease10984
General knowledge
Homologs : HomoloGeneKCNQ1OT1
Homology/Alignments : Family Browser (UCSC)KCNQ1OT1
Phylogenetic Trees/Animal Genes : TreeFamKCNQ1OT1
Chemical/Protein Interactions : CTD10984
Chemical/Pharm GKB GenePA30073
Clinical trialKCNQ1OT1
Ontology : AmiGO
Ontology : EGO-EBI
Other databases
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
PubGeneKCNQ1OT1
iHOPKCNQ1OT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:18:39 CEST 2013
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