Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNQ1OT1 (KCNQ1 opposite strand/antisense transcript 1)

Identity

Alias (NCBI)KCNQ1-AS2
KCNQ10T1
Kncq1
KvDMR1
KvLQT1-AS
LIT1
NCRNA00012
HGNC (Hugo) KCNQ1OT1
HGNC Alias symbKvDMR1
KCNQ1-AS2
KvLQT1-AS
LIT1
NCRNA00012
HGNC Alias namenon-protein coding RNA 12
 KCNQ1 antisense RNA 2 (non-protein coding)
 KCNQ1 overlapping transcript 1 (non-protein coding)
HGNC Previous nameKCNQ1 opposite strand/antisense transcript 1 (non-protein coding)
LocusID (NCBI) 10984
Atlas_Id 307
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 2608328 and ends at 2699998 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 1 ]
  Beckwith-Wiedemann syndrome


External links

Nomenclature
HGNC (Hugo)KCNQ1OT1   6295
LRG (Locus Reference Genomic)LRG_1052
Cards
Entrez_Gene (NCBI)KCNQ1OT1    KCNQ1 opposite strand/antisense transcript 1
AliasesKCNQ1-AS2; KCNQ10T1; Kncq1; KvDMR1; 
KvLQT1-AS; LIT1; NCRNA00012
GeneCards (Weizmann)KCNQ1OT1
Ensembl hg19 (Hinxton)ENSG00000269821 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269821 [Gene_View]  ENSG00000269821 [Sequence]  chr11:2608328-2699998 [Contig_View]  KCNQ1OT1 [Vega]
ICGC DataPortalENSG00000269821
TCGA cBioPortalKCNQ1OT1
AceView (NCBI)KCNQ1OT1
Genatlas (Paris)KCNQ1OT1
SOURCE (Princeton)KCNQ1OT1
Genetics Home Reference (NIH)KCNQ1OT1
Genomic and cartography
GoldenPath hg38 (UCSC)KCNQ1OT1  -     chr11:2608328-2699998 -  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCNQ1OT1  -     11p15.5   [Description]    (hg19-Feb_2009)
GoldenPathKCNQ1OT1 - 11p15.5 [CytoView hg19]  KCNQ1OT1 - 11p15.5 [CytoView hg38]
ImmunoBaseENSG00000269821
Genome Data Viewer NCBIKCNQ1OT1 [Mapview hg19]  
OMIM130650   604115   
Gene and transcription
Genbank (Entrez)AA155694 AF086011 AK123073 HG975405
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)KCNQ1OT1
Gene ExpressionKCNQ1OT1 [ NCBI-GEO ]   KCNQ1OT1 [ EBI - ARRAY_EXPRESS ]   KCNQ1OT1 [ SEEK ]   KCNQ1OT1 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNQ1OT1 [ Firebrowse - Broad ]
GenevisibleExpression of KCNQ1OT1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10984
GTEX Portal (Tissue expression)KCNQ1OT1
Human Protein AtlasENSG00000269821-KCNQ1OT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KCNQ1OT1
Human Protein Atlas [tissue]ENSG00000269821-KCNQ1OT1 [tissue]
Protein Interaction databases
BioGRIDKCNQ1OT1
STRING (EMBL)KCNQ1OT1
ZODIACKCNQ1OT1
Ontologies - Pathways
Litterature
PubMed121 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXKCNQ1OT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Jan 20 12:39:32 CET 2022

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