Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNRG (potassium channel regulator)

Identity

Other aliasDLTET
HGNC (Hugo) KCNRG
LocusID (NCBI) 283518
Atlas_Id 43810
Location 13q14.2  [Link to chromosome band 13q14]
Location_base_pair Starts at 50589390 and ends at 50595058 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GRHL2 (8q22.3) / KCNRG (13q14.2)RB1 (13q14.2) / KCNRG (13q14.2)TRIM13 (13q14.2) / KCNRG (13q14.2)
GRHL2 8q22.3 / KCNRG 13q14.2RB1 13q14.2 / KCNRG 13q14.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNRG   18893
Cards
Entrez_Gene (NCBI)KCNRG  283518  potassium channel regulator
AliasesDLTET
GeneCards (Weizmann)KCNRG
Ensembl hg19 (Hinxton)ENSG00000198553 [Gene_View]  chr13:50589390-50595058 [Contig_View]  KCNRG [Vega]
Ensembl hg38 (Hinxton)ENSG00000198553 [Gene_View]  chr13:50589390-50595058 [Contig_View]  KCNRG [Vega]
ICGC DataPortalENSG00000198553
TCGA cBioPortalKCNRG
AceView (NCBI)KCNRG
Genatlas (Paris)KCNRG
WikiGenes283518
SOURCE (Princeton)KCNRG
Genetics Home Reference (NIH)KCNRG
Genomic and cartography
GoldenPath hg19 (UCSC)KCNRG  -     chr13:50589390-50595058 +  13q14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KCNRG  -     13q14.2   [Description]    (hg38-Dec_2013)
EnsemblKCNRG - 13q14.2 [CytoView hg19]  KCNRG - 13q14.2 [CytoView hg38]
Mapping of homologs : NCBIKCNRG [Mapview hg19]  KCNRG [Mapview hg38]
OMIM607947   
Gene and transcription
Genbank (Entrez)AF086244 AK313401 AY129653 AY129654 AY169387
RefSeq transcript (Entrez)NM_173605 NM_199464
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)KCNRG
Cluster EST : UnigeneHs.660161 [ NCBI ]
CGAP (NCI)Hs.660161
Alternative Splicing GalleryENSG00000198553
Gene ExpressionKCNRG [ NCBI-GEO ]   KCNRG [ EBI - ARRAY_EXPRESS ]   KCNRG [ SEEK ]   KCNRG [ MEM ]
Gene Expression Viewer (FireBrowse)KCNRG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283518
GTEX Portal (Tissue expression)KCNRG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5I3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5I3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5I3
Splice isoforms : SwissVarQ8N5I3
PhosPhoSitePlusQ8N5I3
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    T1-type_BTB   
Domain families : Pfam (Sanger)BTB_2 (PF02214)   
Domain families : Pfam (NCBI)pfam02214   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCNRG
DMDM Disease mutations283518
Blocks (Seattle)KCNRG
SuperfamilyQ8N5I3
Human Protein AtlasENSG00000198553
Peptide AtlasQ8N5I3
HPRD06404
IPIIPI00166859   IPI00216656   IPI00759536   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5I3
IntAct (EBI)Q8N5I3
FunCoupENSG00000198553
BioGRIDKCNRG
STRING (EMBL)KCNRG
ZODIACKCNRG
Ontologies - Pathways
QuickGOQ8N5I3
Ontology : AmiGOprotein binding  endoplasmic reticulum  identical protein binding  protein homooligomerization  negative regulation of delayed rectifier potassium channel activity  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  identical protein binding  protein homooligomerization  negative regulation of delayed rectifier potassium channel activity  
NDEx NetworkKCNRG
Atlas of Cancer Signalling NetworkKCNRG
Wikipedia pathwaysKCNRG
Orthology - Evolution
OrthoDB283518
GeneTree (enSembl)ENSG00000198553
Phylogenetic Trees/Animal Genes : TreeFamKCNRG
HOVERGENQ8N5I3
HOGENOMQ8N5I3
Homologs : HomoloGeneKCNRG
Homology/Alignments : Family Browser (UCSC)KCNRG
Gene fusions - Rearrangements
Fusion : MitelmanGRHL2/KCNRG [8q22.3/13q14.2]  [t(8;13)(q22;q14)]  
Fusion : MitelmanRB1/KCNRG [13q14.2/13q14.2]  [t(13;13)(q14;q14)]  
Fusion: TCGAGRHL2 8q22.3 KCNRG 13q14.2 HNSC
Fusion: TCGARB1 13q14.2 KCNRG 13q14.2 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNRG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNRG
dbVarKCNRG
ClinVarKCNRG
1000_GenomesKCNRG 
Exome Variant ServerKCNRG
ExAC (Exome Aggregation Consortium)KCNRG (select the gene name)
Genetic variants : HAPMAP283518
Genomic Variants (DGV)KCNRG [DGVbeta]
DECIPHER (Syndromes)13:50589390-50595058  ENSG00000198553
CONAN: Copy Number AnalysisKCNRG 
Mutations
ICGC Data PortalKCNRG 
TCGA Data PortalKCNRG 
Broad Tumor PortalKCNRG
OASIS PortalKCNRG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNRG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCNRG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNRG
DgiDB (Drug Gene Interaction Database)KCNRG
DoCM (Curated mutations)KCNRG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNRG (select a term)
intoGenKCNRG
Cancer3DKCNRG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607947   
Orphanet
MedgenKCNRG
Genetic Testing Registry KCNRG
NextProtQ8N5I3 [Medical]
TSGene283518
GENETestsKCNRG
Huge Navigator KCNRG [HugePedia]
snp3D : Map Gene to Disease283518
BioCentury BCIQKCNRG
ClinGenKCNRG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283518
Chemical/Pharm GKB GenePA134924183
Clinical trialKCNRG
Miscellaneous
canSAR (ICR)KCNRG (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNRG
EVEXKCNRG
GoPubMedKCNRG
iHOPKCNRG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:11:38 CET 2017

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