Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNS1 (potassium voltage-gated channel modifier subfamily S member 1)

Identity

Alias_namespotassium voltage-gated channel, delayed-rectifier, subfamily S, member 1
potassium voltage-gated channel, modifier subfamily S, member 1
Alias_symbol (synonym)Kv9.1
Other alias
HGNC (Hugo) KCNS1
LocusID (NCBI) 3787
Atlas_Id 64810
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45091216 and ends at 45101112 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNS1   6300
Cards
Entrez_Gene (NCBI)KCNS1  3787  potassium voltage-gated channel modifier subfamily S member 1
AliasesKv9.1
GeneCards (Weizmann)KCNS1
Ensembl hg19 (Hinxton)ENSG00000124134 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124134 [Gene_View]  chr20:45091216-45101112 [Contig_View]  KCNS1 [Vega]
ICGC DataPortalENSG00000124134
TCGA cBioPortalKCNS1
AceView (NCBI)KCNS1
Genatlas (Paris)KCNS1
WikiGenes3787
SOURCE (Princeton)KCNS1
Genetics Home Reference (NIH)KCNS1
Genomic and cartography
GoldenPath hg38 (UCSC)KCNS1  -     chr20:45091216-45101112 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCNS1  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblKCNS1 - 20q13.12 [CytoView hg19]  KCNS1 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIKCNS1 [Mapview hg19]  KCNS1 [Mapview hg38]
OMIM602905   
Gene and transcription
Genbank (Entrez)AF043473 AK289735 BC075033 BC075034 BC132957
RefSeq transcript (Entrez)NM_001322799 NM_002251
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCNS1
Cluster EST : UnigeneHs.563002 [ NCBI ]
CGAP (NCI)Hs.563002
Alternative Splicing GalleryENSG00000124134
Gene ExpressionKCNS1 [ NCBI-GEO ]   KCNS1 [ EBI - ARRAY_EXPRESS ]   KCNS1 [ SEEK ]   KCNS1 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3787
GTEX Portal (Tissue expression)KCNS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KK3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KK3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KK3
Splice isoforms : SwissVarQ96KK3
PhosPhoSitePlusQ96KK3
Domains : Interpro (EBI)BTB/POZ_dom    Channel_four-helix_dom    Ion_trans_dom    K_chnl_volt-dep_Kv    K_chnl_volt-dep_Kv9    SKP1/BTB/POZ    T1-type_BTB    VG_K_chnl   
Domain families : Pfam (Sanger)BTB_2 (PF02214)    Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam02214    pfam00520   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCNS1
DMDM Disease mutations3787
Blocks (Seattle)KCNS1
SuperfamilyQ96KK3
Human Protein AtlasENSG00000124134
Peptide AtlasQ96KK3
HPRD04214
IPIIPI00102065   
Protein Interaction databases
DIP (DOE-UCLA)Q96KK3
IntAct (EBI)Q96KK3
FunCoupENSG00000124134
BioGRIDKCNS1
STRING (EMBL)KCNS1
ZODIACKCNS1
Ontologies - Pathways
QuickGOQ96KK3
Ontology : AmiGOdelayed rectifier potassium channel activity  protein binding  plasma membrane  plasma membrane  potassium ion transport  voltage-gated potassium channel complex  potassium channel regulator activity  perinuclear region of cytoplasm  protein homooligomerization  potassium ion transmembrane transport  regulation of delayed rectifier potassium channel activity  
Ontology : EGO-EBIdelayed rectifier potassium channel activity  protein binding  plasma membrane  plasma membrane  potassium ion transport  voltage-gated potassium channel complex  potassium channel regulator activity  perinuclear region of cytoplasm  protein homooligomerization  potassium ion transmembrane transport  regulation of delayed rectifier potassium channel activity  
NDEx NetworkKCNS1
Atlas of Cancer Signalling NetworkKCNS1
Wikipedia pathwaysKCNS1
Orthology - Evolution
OrthoDB3787
GeneTree (enSembl)ENSG00000124134
Phylogenetic Trees/Animal Genes : TreeFamKCNS1
HOVERGENQ96KK3
HOGENOMQ96KK3
Homologs : HomoloGeneKCNS1
Homology/Alignments : Family Browser (UCSC)KCNS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNS1
dbVarKCNS1
ClinVarKCNS1
1000_GenomesKCNS1 
Exome Variant ServerKCNS1
ExAC (Exome Aggregation Consortium)KCNS1 (select the gene name)
Genetic variants : HAPMAP3787
Genomic Variants (DGV)KCNS1 [DGVbeta]
DECIPHERKCNS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCNS1 
Mutations
ICGC Data PortalKCNS1 
TCGA Data PortalKCNS1 
Broad Tumor PortalKCNS1
OASIS PortalKCNS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCNS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNS1
DgiDB (Drug Gene Interaction Database)KCNS1
DoCM (Curated mutations)KCNS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNS1 (select a term)
intoGenKCNS1
Cancer3DKCNS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602905   
Orphanet
MedgenKCNS1
Genetic Testing Registry KCNS1
NextProtQ96KK3 [Medical]
TSGene3787
GENETestsKCNS1
Huge Navigator KCNS1 [HugePedia]
snp3D : Map Gene to Disease3787
BioCentury BCIQKCNS1
ClinGenKCNS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3787
Chemical/Pharm GKB GenePA30078
Clinical trialKCNS1
Miscellaneous
canSAR (ICR)KCNS1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNS1
EVEXKCNS1
GoPubMedKCNS1
iHOPKCNS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:17:42 CEST 2017

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