Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNS2 (potassium voltage-gated channel, modifier subfamily S, member 2)

Identity

Alias_namespotassium voltage-gated channel, delayed-rectifier, subfamily S, member 2
potassium voltage-gated channel, modifier subfamily S, member 2
Alias_symbol (synonym)Kv9.2
Other aliasKV9.2
HGNC (Hugo) KCNS2
LocusID (NCBI) 3788
Atlas_Id 64811
Location 8q22.2  [Link to chromosome band 8q22]
Location_base_pair Starts at 99439250 and ends at 99443023 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNS2   6301
Cards
Entrez_Gene (NCBI)KCNS2  3788  potassium voltage-gated channel, modifier subfamily S, member 2
AliasesKV9.2
GeneCards (Weizmann)KCNS2
Ensembl hg19 (Hinxton) [Gene_View]  chr8:99439250-99443023 [Contig_View]  KCNS2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:99439250-99443023 [Contig_View]  KCNS2 [Vega]
TCGA cBioPortalKCNS2
AceView (NCBI)KCNS2
Genatlas (Paris)KCNS2
WikiGenes3788
SOURCE (Princeton)KCNS2
Genetics Home Reference (NIH)KCNS2
Genomic and cartography
GoldenPath hg19 (UCSC)KCNS2  -     chr8:99439250-99443023 +  8q22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KCNS2  -     8q22.2   [Description]    (hg38-Dec_2013)
EnsemblKCNS2 - 8q22.2 [CytoView hg19]  KCNS2 - 8q22.2 [CytoView hg38]
Mapping of homologs : NCBIKCNS2 [Mapview hg19]  KCNS2 [Mapview hg38]
OMIM602906   
Gene and transcription
Genbank (Entrez)AB032970 AK293096 BC027932 BC034778 JF432201
RefSeq transcript (Entrez)NM_020697
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)KCNS2
Cluster EST : UnigeneHs.388045 [ NCBI ]
CGAP (NCI)Hs.388045
Gene ExpressionKCNS2 [ NCBI-GEO ]   KCNS2 [ EBI - ARRAY_EXPRESS ]   KCNS2 [ SEEK ]   KCNS2 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3788
GTEX Portal (Tissue expression)KCNS2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULS6
Splice isoforms : SwissVarQ9ULS6
PhosPhoSitePlusQ9ULS6
Domains : Interpro (EBI)BTB/POZ-like    BTB/POZ_fold    Channel_four-helix_dom    Ion_trans_dom    K_chnl    K_chnl_volt-dep_Kv    K_chnl_volt-dep_Kv9    T1-type_BTB    VG_K_chnl   
Domain families : Pfam (Sanger)BTB_2 (PF02214)    Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam02214    pfam00520   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCNS2
DMDM Disease mutations3788
Blocks (Seattle)KCNS2
SuperfamilyQ9ULS6
Peptide AtlasQ9ULS6
HPRD04215
IPIIPI00020329   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULS6
IntAct (EBI)Q9ULS6
BioGRIDKCNS2
STRING (EMBL)KCNS2
ZODIACKCNS2
Ontologies - Pathways
QuickGOQ9ULS6
Ontology : AmiGOdelayed rectifier potassium channel activity  protein binding  plasma membrane  synaptic transmission  voltage-gated potassium channel complex  integral component of membrane  regulation of ion transmembrane transport  protein homooligomerization  potassium ion transmembrane transport  
Ontology : EGO-EBIdelayed rectifier potassium channel activity  protein binding  plasma membrane  synaptic transmission  voltage-gated potassium channel complex  integral component of membrane  regulation of ion transmembrane transport  protein homooligomerization  potassium ion transmembrane transport  
NDEx NetworkKCNS2
Atlas of Cancer Signalling NetworkKCNS2
Wikipedia pathwaysKCNS2
Orthology - Evolution
OrthoDB3788
Phylogenetic Trees/Animal Genes : TreeFamKCNS2
HOVERGENQ9ULS6
HOGENOMQ9ULS6
Homologs : HomoloGeneKCNS2
Homology/Alignments : Family Browser (UCSC)KCNS2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNS2
dbVarKCNS2
ClinVarKCNS2
1000_GenomesKCNS2 
Exome Variant ServerKCNS2
ExAC (Exome Aggregation Consortium)KCNS2 (select the gene name)
Genetic variants : HAPMAP3788
Genomic Variants (DGV)KCNS2 [DGVbeta]
DECIPHER (Syndromes)8:99439250-99443023  
CONAN: Copy Number AnalysisKCNS2 
Mutations
ICGC Data PortalKCNS2 
TCGA Data PortalKCNS2 
Broad Tumor PortalKCNS2
OASIS PortalKCNS2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNS2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCNS2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNS2
DgiDB (Drug Gene Interaction Database)KCNS2
DoCM (Curated mutations)KCNS2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNS2 (select a term)
intoGenKCNS2
Cancer3DKCNS2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602906   
Orphanet
MedgenKCNS2
Genetic Testing Registry KCNS2
NextProtQ9ULS6 [Medical]
TSGene3788
GENETestsKCNS2
Huge Navigator KCNS2 [HugePedia]
snp3D : Map Gene to Disease3788
BioCentury BCIQKCNS2
ClinGenKCNS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3788
Chemical/Pharm GKB GenePA30079
Clinical trialKCNS2
Miscellaneous
canSAR (ICR)KCNS2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNS2
EVEXKCNS2
GoPubMedKCNS2
iHOPKCNS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:32 CET 2017

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