Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNS3 (potassium voltage-gated channel modifier subfamily S member 3)

Identity

Alias_namespotassium voltage-gated channel, delayed-rectifier, subfamily S, member 3
potassium voltage-gated channel, modifier subfamily S, member 3
Alias_symbol (synonym)Kv9.3
Other aliasKV9.3
HGNC (Hugo) KCNS3
LocusID (NCBI) 3790
Atlas_Id 54398
Location 2p24.2  [Link to chromosome band 2p24]
Location_base_pair Starts at 18059114 and ends at 18114225 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNS3   6302
Cards
Entrez_Gene (NCBI)KCNS3  3790  potassium voltage-gated channel modifier subfamily S member 3
AliasesKV9.3
GeneCards (Weizmann)KCNS3
Ensembl hg19 (Hinxton)ENSG00000170745 [Gene_View]  chr2:18059114-18114225 [Contig_View]  KCNS3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170745 [Gene_View]  chr2:18059114-18114225 [Contig_View]  KCNS3 [Vega]
ICGC DataPortalENSG00000170745
TCGA cBioPortalKCNS3
AceView (NCBI)KCNS3
Genatlas (Paris)KCNS3
WikiGenes3790
SOURCE (Princeton)KCNS3
Genetics Home Reference (NIH)KCNS3
Genomic and cartography
GoldenPath hg19 (UCSC)KCNS3  -     chr2:18059114-18114225 +  2p24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KCNS3  -     2p24.2   [Description]    (hg38-Dec_2013)
EnsemblKCNS3 - 2p24.2 [CytoView hg19]  KCNS3 - 2p24.2 [CytoView hg38]
Mapping of homologs : NCBIKCNS3 [Mapview hg19]  KCNS3 [Mapview hg38]
OMIM603888   
Gene and transcription
Genbank (Entrez)AF043472 AK075088 AK225833 AK314451 BC004148
RefSeq transcript (Entrez)NM_001282428 NM_002252
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_012873 NT_022184 NW_004929299
Consensus coding sequences : CCDS (NCBI)KCNS3
Cluster EST : UnigeneHs.414489 [ NCBI ]
CGAP (NCI)Hs.414489
Alternative Splicing GalleryENSG00000170745
Gene ExpressionKCNS3 [ NCBI-GEO ]   KCNS3 [ EBI - ARRAY_EXPRESS ]   KCNS3 [ SEEK ]   KCNS3 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNS3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3790
GTEX Portal (Tissue expression)KCNS3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQ31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQ31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQ31
Splice isoforms : SwissVarQ9BQ31
PhosPhoSitePlusQ9BQ31
Domains : Interpro (EBI)BTB/POZ_dom    Channel_four-helix_dom    Ion_trans_dom    K_chnl_volt-dep_Kv    K_chnl_volt-dep_Kv9    SKP1/BTB/POZ    T1-type_BTB    VG_K_chnl   
Domain families : Pfam (Sanger)BTB_2 (PF02214)    Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam02214    pfam00520   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCNS3
DMDM Disease mutations3790
Blocks (Seattle)KCNS3
SuperfamilyQ9BQ31
Human Protein AtlasENSG00000170745
Peptide AtlasQ9BQ31
HPRD04865
IPIIPI00304363   IPI00892968   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQ31
IntAct (EBI)Q9BQ31
FunCoupENSG00000170745
BioGRIDKCNS3
STRING (EMBL)KCNS3
ZODIACKCNS3
Ontologies - Pathways
QuickGOQ9BQ31
Ontology : AmiGOdelayed rectifier potassium channel activity  cytoplasm  Golgi apparatus  plasma membrane  plasma membrane  potassium ion transport  voltage-gated potassium channel complex  potassium channel regulator activity  integral component of membrane  regulation of ion transmembrane transport  regulation of insulin secretion  protein homooligomerization  potassium ion transmembrane transport  
Ontology : EGO-EBIdelayed rectifier potassium channel activity  cytoplasm  Golgi apparatus  plasma membrane  plasma membrane  potassium ion transport  voltage-gated potassium channel complex  potassium channel regulator activity  integral component of membrane  regulation of ion transmembrane transport  regulation of insulin secretion  protein homooligomerization  potassium ion transmembrane transport  
NDEx NetworkKCNS3
Atlas of Cancer Signalling NetworkKCNS3
Wikipedia pathwaysKCNS3
Orthology - Evolution
OrthoDB3790
GeneTree (enSembl)ENSG00000170745
Phylogenetic Trees/Animal Genes : TreeFamKCNS3
HOVERGENQ9BQ31
HOGENOMQ9BQ31
Homologs : HomoloGeneKCNS3
Homology/Alignments : Family Browser (UCSC)KCNS3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNS3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNS3
dbVarKCNS3
ClinVarKCNS3
1000_GenomesKCNS3 
Exome Variant ServerKCNS3
ExAC (Exome Aggregation Consortium)KCNS3 (select the gene name)
Genetic variants : HAPMAP3790
Genomic Variants (DGV)KCNS3 [DGVbeta]
DECIPHER (Syndromes)2:18059114-18114225  ENSG00000170745
CONAN: Copy Number AnalysisKCNS3 
Mutations
ICGC Data PortalKCNS3 
TCGA Data PortalKCNS3 
Broad Tumor PortalKCNS3
OASIS PortalKCNS3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNS3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCNS3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNS3
DgiDB (Drug Gene Interaction Database)KCNS3
DoCM (Curated mutations)KCNS3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNS3 (select a term)
intoGenKCNS3
Cancer3DKCNS3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603888   
Orphanet
MedgenKCNS3
Genetic Testing Registry KCNS3
NextProtQ9BQ31 [Medical]
TSGene3790
GENETestsKCNS3
Huge Navigator KCNS3 [HugePedia]
snp3D : Map Gene to Disease3790
BioCentury BCIQKCNS3
ClinGenKCNS3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3790
Chemical/Pharm GKB GenePA30080
Clinical trialKCNS3
Miscellaneous
canSAR (ICR)KCNS3 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNS3
EVEXKCNS3
GoPubMedKCNS3
iHOPKCNS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:11:38 CET 2017

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