Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KCNV1 (potassium voltage-gated channel modifier subfamily V member 1)

Identity

Alias_namespotassium channel, subfamily V, member 1
potassium channel, voltage gated modifier subfamily V, member 1
Alias_symbol (synonym)Kv8.1
Other aliasHNKA
KCNB3
KV2.3
KV8.1
HGNC (Hugo) KCNV1
LocusID (NCBI) 27012
Atlas_Id 64814
Location 8q23.2  [Link to chromosome band 8q23]
Location_base_pair Starts at 109963645 and ends at 109975847 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC38A2 (12q13.11) / KCNV1 (8q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNV1   18861
Cards
Entrez_Gene (NCBI)KCNV1  27012  potassium voltage-gated channel modifier subfamily V member 1
AliasesHNKA; KCNB3; KV2.3; KV8.1
GeneCards (Weizmann)KCNV1
Ensembl hg19 (Hinxton)ENSG00000164794 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164794 [Gene_View]  chr8:109963645-109975847 [Contig_View]  KCNV1 [Vega]
ICGC DataPortalENSG00000164794
TCGA cBioPortalKCNV1
AceView (NCBI)KCNV1
Genatlas (Paris)KCNV1
WikiGenes27012
SOURCE (Princeton)KCNV1
Genetics Home Reference (NIH)KCNV1
Genomic and cartography
GoldenPath hg38 (UCSC)KCNV1  -     chr8:109963645-109975847 -  8q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCNV1  -     8q23.2   [Description]    (hg19-Feb_2009)
EnsemblKCNV1 - 8q23.2 [CytoView hg19]  KCNV1 - 8q23.2 [CytoView hg38]
Mapping of homologs : NCBIKCNV1 [Mapview hg19]  KCNV1 [Mapview hg38]
OMIM608164   
Gene and transcription
Genbank (Entrez)AF035317 AF167082 AK297393 AK308123 AK313469
RefSeq transcript (Entrez)NM_014379
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCNV1
Cluster EST : UnigeneHs.13285 [ NCBI ]
CGAP (NCI)Hs.13285
Alternative Splicing GalleryENSG00000164794
Gene ExpressionKCNV1 [ NCBI-GEO ]   KCNV1 [ EBI - ARRAY_EXPRESS ]   KCNV1 [ SEEK ]   KCNV1 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNV1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27012
GTEX Portal (Tissue expression)KCNV1
Human Protein AtlasENSG00000164794-KCNV1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PIU1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PIU1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PIU1
Splice isoforms : SwissVarQ6PIU1
PhosPhoSitePlusQ6PIU1
Domains : Interpro (EBI)BTB/POZ_dom    Channel_four-helix_dom    Ion_trans_dom    K_chnl_volt-dep_Kv    K_chnl_volt-dep_Kv8.1    SKP1/BTB/POZ    T1-type_BTB    VG_K_chnl   
Domain families : Pfam (Sanger)BTB_2 (PF02214)    Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam02214    pfam00520   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCNV1
DMDM Disease mutations27012
Blocks (Seattle)KCNV1
SuperfamilyQ6PIU1
Human Protein Atlas [tissue]ENSG00000164794-KCNV1 [tissue]
Peptide AtlasQ6PIU1
HPRD16293
IPIIPI00164159   IPI01009893   
Protein Interaction databases
DIP (DOE-UCLA)Q6PIU1
IntAct (EBI)Q6PIU1
FunCoupENSG00000164794
BioGRIDKCNV1
STRING (EMBL)KCNV1
ZODIACKCNV1
Ontologies - Pathways
QuickGOQ6PIU1
Ontology : AmiGOvoltage-gated potassium channel activity  plasma membrane  integral component of plasma membrane  potassium ion transport  voltage-gated potassium channel complex  ion channel inhibitor activity  potassium channel regulator activity  regulation of ion transmembrane transport  protein homooligomerization  regulation of molecular function  potassium ion transmembrane transport  
Ontology : EGO-EBIvoltage-gated potassium channel activity  plasma membrane  integral component of plasma membrane  potassium ion transport  voltage-gated potassium channel complex  ion channel inhibitor activity  potassium channel regulator activity  regulation of ion transmembrane transport  protein homooligomerization  regulation of molecular function  potassium ion transmembrane transport  
NDEx NetworkKCNV1
Atlas of Cancer Signalling NetworkKCNV1
Wikipedia pathwaysKCNV1
Orthology - Evolution
OrthoDB27012
GeneTree (enSembl)ENSG00000164794
Phylogenetic Trees/Animal Genes : TreeFamKCNV1
HOVERGENQ6PIU1
HOGENOMQ6PIU1
Homologs : HomoloGeneKCNV1
Homology/Alignments : Family Browser (UCSC)KCNV1
Gene fusions - Rearrangements
Fusion: Tumor Portal KCNV1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNV1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNV1
dbVarKCNV1
ClinVarKCNV1
1000_GenomesKCNV1 
Exome Variant ServerKCNV1
ExAC (Exome Aggregation Consortium)ENSG00000164794
GNOMAD BrowserENSG00000164794
Genetic variants : HAPMAP27012
Genomic Variants (DGV)KCNV1 [DGVbeta]
DECIPHERKCNV1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCNV1 
Mutations
ICGC Data PortalKCNV1 
TCGA Data PortalKCNV1 
Broad Tumor PortalKCNV1
OASIS PortalKCNV1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNV1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCNV1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNV1
DgiDB (Drug Gene Interaction Database)KCNV1
DoCM (Curated mutations)KCNV1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNV1 (select a term)
intoGenKCNV1
Cancer3DKCNV1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608164   
Orphanet
MedgenKCNV1
Genetic Testing Registry KCNV1
NextProtQ6PIU1 [Medical]
TSGene27012
GENETestsKCNV1
Target ValidationKCNV1
Huge Navigator KCNV1 [HugePedia]
snp3D : Map Gene to Disease27012
BioCentury BCIQKCNV1
ClinGenKCNV1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27012
Chemical/Pharm GKB GenePA38721
Clinical trialKCNV1
Miscellaneous
canSAR (ICR)KCNV1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNV1
EVEXKCNV1
GoPubMedKCNV1
iHOPKCNV1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:52:13 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.