Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCTD10 (potassium channel tetramerization domain containing 10)

Identity

Alias_namespotassium channel tetramerisation domain containing 10
Alias_symbol (synonym)MSTP028
BTBD28
Other aliasULRO61
hBACURD3
HGNC (Hugo) KCTD10
LocusID (NCBI) 83892
Atlas_Id 55029
Location 12q24.11  [Link to chromosome band 12q24]
Location_base_pair Starts at 109448655 and ends at 109477544 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KCTD10 (12q24.11) / BMP1 (8p21.3)KCTD10 (12q24.11) / TPCN1 (12q24.13)MAPKAP1 (9q33.3) / KCTD10 (12q24.11)
PNPLA1 (6p21.31) / KCTD10 (12q24.11)RGMA (15q26.1) / KCTD10 (12q24.11)KCTD10 12q24.11 / TPCN1 12q24.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCTD10   23236
Cards
Entrez_Gene (NCBI)KCTD10  83892  potassium channel tetramerization domain containing 10
AliasesBTBD28; MSTP028; ULRO61; hBACURD3
GeneCards (Weizmann)KCTD10
Ensembl hg19 (Hinxton)ENSG00000110906 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110906 [Gene_View]  chr12:109448655-109477544 [Contig_View]  KCTD10 [Vega]
ICGC DataPortalENSG00000110906
TCGA cBioPortalKCTD10
AceView (NCBI)KCTD10
Genatlas (Paris)KCTD10
WikiGenes83892
SOURCE (Princeton)KCTD10
Genetics Home Reference (NIH)KCTD10
Genomic and cartography
GoldenPath hg38 (UCSC)KCTD10  -     chr12:109448655-109477544 -  12q24.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCTD10  -     12q24.11   [Description]    (hg19-Feb_2009)
EnsemblKCTD10 - 12q24.11 [CytoView hg19]  KCTD10 - 12q24.11 [CytoView hg38]
Mapping of homologs : NCBIKCTD10 [Mapview hg19]  KCTD10 [Mapview hg38]
OMIM613421   
Gene and transcription
Genbank (Entrez)AB209358 AF113208 AK027543 AK056912 AK092170
RefSeq transcript (Entrez)NM_001317395 NM_001317399 NM_031954
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCTD10
Cluster EST : UnigeneHs.524731 [ NCBI ]
CGAP (NCI)Hs.524731
Alternative Splicing GalleryENSG00000110906
Gene ExpressionKCTD10 [ NCBI-GEO ]   KCTD10 [ EBI - ARRAY_EXPRESS ]   KCTD10 [ SEEK ]   KCTD10 [ MEM ]
Gene Expression Viewer (FireBrowse)KCTD10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83892
GTEX Portal (Tissue expression)KCTD10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3F6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3F6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3F6
Splice isoforms : SwissVarQ9H3F6
PhosPhoSitePlusQ9H3F6
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    T1-type_BTB   
Domain families : Pfam (Sanger)BTB_2 (PF02214)   
Domain families : Pfam (NCBI)pfam02214   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCTD10
DMDM Disease mutations83892
Blocks (Seattle)KCTD10
PDB (SRS)5FTA   
PDB (PDBSum)5FTA   
PDB (IMB)5FTA   
PDB (RSDB)5FTA   
Structural Biology KnowledgeBase5FTA   
SCOP (Structural Classification of Proteins)5FTA   
CATH (Classification of proteins structures)5FTA   
SuperfamilyQ9H3F6
Human Protein AtlasENSG00000110906
Peptide AtlasQ9H3F6
HPRD13762
IPIIPI00011209   IPI00783039   IPI00784180   IPI01012479   IPI01011655   IPI01010409   IPI01018635   IPI01009600   IPI01010433   IPI01015735   IPI01009158   IPI01014938   IPI01015361   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3F6
IntAct (EBI)Q9H3F6
FunCoupENSG00000110906
BioGRIDKCTD10
STRING (EMBL)KCTD10
ZODIACKCTD10
Ontologies - Pathways
QuickGOQ9H3F6
Ontology : AmiGOubiquitin-protein transferase activity  Notch binding  protein binding  nucleoplasm  cytosol  ubiquitin-dependent protein catabolic process  protein ubiquitination  protein ubiquitination  Cul3-RING ubiquitin ligase complex  proteasome-mediated ubiquitin-dependent protein catabolic process  protein homooligomerization  
Ontology : EGO-EBIubiquitin-protein transferase activity  Notch binding  protein binding  nucleoplasm  cytosol  ubiquitin-dependent protein catabolic process  protein ubiquitination  protein ubiquitination  Cul3-RING ubiquitin ligase complex  proteasome-mediated ubiquitin-dependent protein catabolic process  protein homooligomerization  
NDEx NetworkKCTD10
Atlas of Cancer Signalling NetworkKCTD10
Wikipedia pathwaysKCTD10
Orthology - Evolution
OrthoDB83892
GeneTree (enSembl)ENSG00000110906
Phylogenetic Trees/Animal Genes : TreeFamKCTD10
HOVERGENQ9H3F6
HOGENOMQ9H3F6
Homologs : HomoloGeneKCTD10
Homology/Alignments : Family Browser (UCSC)KCTD10
Gene fusions - Rearrangements
Fusion : MitelmanKCTD10/TPCN1 [12q24.11/12q24.13]  
Fusion: TCGAKCTD10 12q24.11 TPCN1 12q24.13 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCTD10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCTD10
dbVarKCTD10
ClinVarKCTD10
1000_GenomesKCTD10 
Exome Variant ServerKCTD10
ExAC (Exome Aggregation Consortium)KCTD10 (select the gene name)
Genetic variants : HAPMAP83892
Genomic Variants (DGV)KCTD10 [DGVbeta]
DECIPHERKCTD10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCTD10 
Mutations
ICGC Data PortalKCTD10 
TCGA Data PortalKCTD10 
Broad Tumor PortalKCTD10
OASIS PortalKCTD10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCTD10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCTD10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCTD10
DgiDB (Drug Gene Interaction Database)KCTD10
DoCM (Curated mutations)KCTD10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCTD10 (select a term)
intoGenKCTD10
Cancer3DKCTD10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613421   
Orphanet
MedgenKCTD10
Genetic Testing Registry KCTD10
NextProtQ9H3F6 [Medical]
TSGene83892
GENETestsKCTD10
Target ValidationKCTD10
Huge Navigator KCTD10 [HugePedia]
snp3D : Map Gene to Disease83892
BioCentury BCIQKCTD10
ClinGenKCTD10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83892
Chemical/Pharm GKB GenePA134938409
Clinical trialKCTD10
Miscellaneous
canSAR (ICR)KCTD10 (select the gene name)
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCTD10
EVEXKCTD10
GoPubMedKCTD10
iHOPKCTD10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:39:22 CEST 2017

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