Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCTD11 (potassium channel tetramerization domain containing 11)

Identity

Alias_namesC17orf36
chromosome 17 open reading frame 36
potassium channel tetramerisation domain containing 11
Alias_symbol (synonym)REN
KCASH1
Other aliasREN/KCTD11
HGNC (Hugo) KCTD11
LocusID (NCBI) 147040
Atlas_Id 41053
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7351889 and ends at 7354943 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCTD11   21302
Cards
Entrez_Gene (NCBI)KCTD11  147040  potassium channel tetramerization domain containing 11
AliasesC17orf36; KCASH1; REN; REN/KCTD11
GeneCards (Weizmann)KCTD11
Ensembl hg19 (Hinxton)ENSG00000213859 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213859 [Gene_View]  chr17:7351889-7354943 [Contig_View]  KCTD11 [Vega]
ICGC DataPortalENSG00000213859
TCGA cBioPortalKCTD11
AceView (NCBI)KCTD11
Genatlas (Paris)KCTD11
WikiGenes147040
SOURCE (Princeton)KCTD11
Genetics Home Reference (NIH)KCTD11
Genomic and cartography
GoldenPath hg38 (UCSC)KCTD11  -     chr17:7351889-7354943 +  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCTD11  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblKCTD11 - 17p13.1 [CytoView hg19]  KCTD11 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIKCTD11 [Mapview hg19]  KCTD11 [Mapview hg38]
OMIM609848   
Gene and transcription
Genbank (Entrez)AK056227 AY646650 BC019929 BC063604 BC103744
RefSeq transcript (Entrez)NM_001002914
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCTD11
Cluster EST : UnigeneHs.592112 [ NCBI ]
CGAP (NCI)Hs.592112
Alternative Splicing GalleryENSG00000213859
Gene ExpressionKCTD11 [ NCBI-GEO ]   KCTD11 [ EBI - ARRAY_EXPRESS ]   KCTD11 [ SEEK ]   KCTD11 [ MEM ]
Gene Expression Viewer (FireBrowse)KCTD11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147040
GTEX Portal (Tissue expression)KCTD11
Human Protein AtlasENSG00000213859-KCTD11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ693B1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ693B1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ693B1
Splice isoforms : SwissVarQ693B1
PhosPhoSitePlusQ693B1
Domains : Interpro (EBI)SKP1/BTB/POZ    T1-type_BTB   
Domain families : Pfam (Sanger)BTB_2 (PF02214)   
Domain families : Pfam (NCBI)pfam02214   
Conserved Domain (NCBI)KCTD11
DMDM Disease mutations147040
Blocks (Seattle)KCTD11
SuperfamilyQ693B1
Human Protein Atlas [tissue]ENSG00000213859-KCTD11 [tissue]
Peptide AtlasQ693B1
HPRD13763
IPIIPI00102959   
Protein Interaction databases
DIP (DOE-UCLA)Q693B1
IntAct (EBI)Q693B1
FunCoupENSG00000213859
BioGRIDKCTD11
STRING (EMBL)KCTD11
ZODIACKCTD11
Ontologies - Pathways
QuickGOQ693B1
Ontology : AmiGOcytoplasm  cell cycle  negative regulation of neuroblast proliferation  protein ubiquitination  transferase activity  regulation of growth  identical protein binding  positive regulation of neuron differentiation  negative regulation of smoothened signaling pathway  protein homooligomerization  
Ontology : EGO-EBIcytoplasm  cell cycle  negative regulation of neuroblast proliferation  protein ubiquitination  transferase activity  regulation of growth  identical protein binding  positive regulation of neuron differentiation  negative regulation of smoothened signaling pathway  protein homooligomerization  
NDEx NetworkKCTD11
Atlas of Cancer Signalling NetworkKCTD11
Wikipedia pathwaysKCTD11
Orthology - Evolution
OrthoDB147040
GeneTree (enSembl)ENSG00000213859
Phylogenetic Trees/Animal Genes : TreeFamKCTD11
HOVERGENQ693B1
HOGENOMQ693B1
Homologs : HomoloGeneKCTD11
Homology/Alignments : Family Browser (UCSC)KCTD11
Gene fusions - Rearrangements
Tumor Fusion PortalKCTD11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCTD11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCTD11
dbVarKCTD11
ClinVarKCTD11
1000_GenomesKCTD11 
Exome Variant ServerKCTD11
ExAC (Exome Aggregation Consortium)ENSG00000213859
GNOMAD BrowserENSG00000213859
Genetic variants : HAPMAP147040
Genomic Variants (DGV)KCTD11 [DGVbeta]
DECIPHER//deai`her.sanger.ac.uk/search?q=gene%3AKCTD11#consented-patients/results TARGET=DECIPHER>KCTD11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCTD11 
Mutations
ICGC Data PortalKCTD11 
TCGA Data PortalKCTD11 
Broad Tumor PortalKCTD11
OASIS PortalKCTD11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCTD11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCTD11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCTD11
DgiDB (Drug Gene Interaction Database)KCTD11
DoCM (Curated mutations)KCTD11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCTD11 (select a term)
intoGenKCTD11
Cancer3DKCTD11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609848   
Orphanet
DisGeNETKCTD11
MedgenKCTD11
Genetic Testing Registry KCTD11
NextProtQ693B1 [Medical]
TSGene147040
GENETestsKCTD11
Target ValidationKCTD11
Huge Navigator KCTD11 [HugePedia]
snp3D : Map Gene to Disease147040
BioCentury BCIQKCTD11
ClinGenKCTD11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147040
Chemical/Pharm GKB GenePA134890547
Clinical trialKCTD11
Miscellaneous
canSAR (ICR)KCTD11 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCTD11
EVEXKCTD11
GoPubMedKCTD11
iHOPKCTD11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:18:42 CET 2017

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