Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KCTD13 (potassium channel tetramerization domain containing 13)

Identity

Alias_namespotassium channel tetramerisation domain containing 13
Alias_symbol (synonym)PDIP1
FKSG86
POLDIP1
Other aliasBACURD1
hBACURD1
HGNC (Hugo) KCTD13
LocusID (NCBI) 253980
Atlas_Id 64819
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29906336 and ends at 29926232 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCTD13   22234
Cards
Entrez_Gene (NCBI)KCTD13  253980  potassium channel tetramerization domain containing 13
AliasesBACURD1; FKSG86; PDIP1; POLDIP1; 
hBACURD1
GeneCards (Weizmann)KCTD13
Ensembl hg19 (Hinxton)ENSG00000174943 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174943 [Gene_View]  chr16:29906336-29926232 [Contig_View]  KCTD13 [Vega]
ICGC DataPortalENSG00000174943
TCGA cBioPortalKCTD13
AceView (NCBI)KCTD13
Genatlas (Paris)KCTD13
WikiGenes253980
SOURCE (Princeton)KCTD13
Genetics Home Reference (NIH)KCTD13
Genomic and cartography
GoldenPath hg38 (UCSC)KCTD13  -     chr16:29906336-29926232 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCTD13  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblKCTD13 - 16p11.2 [CytoView hg19]  KCTD13 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIKCTD13 [Mapview hg19]  KCTD13 [Mapview hg38]
OMIM608947   
Gene and transcription
Genbank (Entrez)AF289573 AF401315 AK097407 AK123825 AK289630
RefSeq transcript (Entrez)NM_178863
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCTD13
Cluster EST : UnigeneHs.657408 [ NCBI ]
CGAP (NCI)Hs.657408
Alternative Splicing GalleryENSG00000174943
Gene ExpressionKCTD13 [ NCBI-GEO ]   KCTD13 [ EBI - ARRAY_EXPRESS ]   KCTD13 [ SEEK ]   KCTD13 [ MEM ]
Gene Expression Viewer (FireBrowse)KCTD13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253980
GTEX Portal (Tissue expression)KCTD13
Human Protein AtlasENSG00000174943-KCTD13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WZ19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WZ19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WZ19
Splice isoforms : SwissVarQ8WZ19
PhosPhoSitePlusQ8WZ19
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    T1-type_BTB   
Domain families : Pfam (Sanger)BTB_2 (PF02214)   
Domain families : Pfam (NCBI)pfam02214   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCTD13
DMDM Disease mutations253980
Blocks (Seattle)KCTD13
PDB (SRS)4UIJ   
PDB (PDBSum)4UIJ   
PDB (IMB)4UIJ   
PDB (RSDB)4UIJ   
Structural Biology KnowledgeBase4UIJ   
SCOP (Structural Classification of Proteins)4UIJ   
CATH (Classification of proteins structures)4UIJ   
SuperfamilyQ8WZ19
Human Protein Atlas [tissue]ENSG00000174943-KCTD13 [tissue]
Peptide AtlasQ8WZ19
HPRD12339
IPIIPI00157833   IPI00982806   
Protein Interaction databases
DIP (DOE-UCLA)Q8WZ19
IntAct (EBI)Q8WZ19
FunCoupENSG00000174943
BioGRIDKCTD13
STRING (EMBL)KCTD13
ZODIACKCTD13
Ontologies - Pathways
QuickGOQ8WZ19
Ontology : AmiGOubiquitin-protein transferase activity  protein binding  nucleus  DNA replication  cell migration  protein ubiquitination  protein ubiquitination  nuclear body  GTP-Rho binding  protein domain specific binding  Cul3-RING ubiquitin ligase complex  negative regulation of Rho protein signal transduction  identical protein binding  stress fiber assembly  proteasome-mediated ubiquitin-dependent protein catabolic process  positive regulation of DNA replication  protein homooligomerization  
Ontology : EGO-EBIubiquitin-protein transferase activity  protein binding  nucleus  DNA replication  cell migration  protein ubiquitination  protein ubiquitination  nuclear body  GTP-Rho binding  protein domain specific binding  Cul3-RING ubiquitin ligase complex  negative regulation of Rho protein signal transduction  identical protein binding  stress fiber assembly  proteasome-mediated ubiquitin-dependent protein catabolic process  positive regulation of DNA replication  protein homooligomerization  
NDEx NetworkKCTD13
Atlas of Cancer Signalling NetworkKCTD13
Wikipedia pathwaysKCTD13
Orthology - Evolution
OrthoDB253980
GeneTree (enSembl)ENSG00000174943
Phylogenetic Trees/Animal Genes : TreeFamKCTD13
HOVERGENQ8WZ19
HOGENOMQ8WZ19
Homologs : HomoloGeneKCTD13
Homology/Alignments : Family Browser (UCSC)KCTD13
Gene fusions - Rearrangements
Tumor Fusion PortalKCTD13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCTD13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCTD13
dbVarKCTD13
ClinVarKCTD13
1000_GenomesKCTD13 
Exome Variant ServerKCTD13
ExAC (Exome Aggregation Consortium)ENSG00000174943
GNOMAD BrowserENSG00000174943
Genetic variants : HAPMAP253980
Genomic Variants (DGV)KCTD13 [DGVbeta]
DECIPHERKCTD13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCTD13 
Mutations
ICGC Data PortalKCTD13 
TCGA Data PortalKCTD13 
Broad Tumor PortalKCTD13
OASIS PortalKCTD13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCTD13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCTD13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCTD13
DgiDB (Drug Gene Interaction Database)KCTD13
DoCM (Curated mutations)KCTD13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCTD13 (select a term)
intoGenKCTD13
Cancer3DKCTD13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608947   
Orphanet
DisGeNETKCTD13
MedgenKCTD13
Genetic Testing Registry KCTD13
NextProtQ8WZ19 [Medical]
TSGene253980
GENETestsKCTD13
Target ValidationKCTD13
Huge Navigator KCTD13 [HugePedia]
snp3D : Map Gene to Disease253980
BioCentury BCIQKCTD13
ClinGenKCTD13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD253980
Chemical/Pharm GKB GenePA134907908
Clinical trialKCTD13
Miscellaneous
canSAR (ICR)KCTD13 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCTD13
EVEXKCTD13
GoPubMedKCTD13
iHOPKCTD13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:33:23 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.