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KCTD15 (potassium channel tetramerization domain containing 15)

Identity

Alias_namespotassium channel tetramerisation domain containing 15
Alias_symbol (synonym)MGC25497
Other alias-
HGNC (Hugo) KCTD15
LocusID (NCBI) 79047
Atlas_Id 64820
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 34287751 and ends at 34306666 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ADCY2 (5p15.31) / KCTD15 (19q13.11)CYR61 (1p22.3) / KCTD15 (19q13.11)KCTD15 (19q13.11) / KCTD15 (19q13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCTD15   23297
Cards
Entrez_Gene (NCBI)KCTD15  79047  potassium channel tetramerization domain containing 15
Aliases
GeneCards (Weizmann)KCTD15
Ensembl hg19 (Hinxton)ENSG00000153885 [Gene_View]  chr19:34287751-34306666 [Contig_View]  KCTD15 [Vega]
Ensembl hg38 (Hinxton)ENSG00000153885 [Gene_View]  chr19:34287751-34306666 [Contig_View]  KCTD15 [Vega]
ICGC DataPortalENSG00000153885
TCGA cBioPortalKCTD15
AceView (NCBI)KCTD15
Genatlas (Paris)KCTD15
WikiGenes79047
SOURCE (Princeton)KCTD15
Genetics Home Reference (NIH)KCTD15
Genomic and cartography
GoldenPath hg19 (UCSC)KCTD15  -     chr19:34287751-34306666 +  19q13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KCTD15  -     19q13.11   [Description]    (hg38-Dec_2013)
EnsemblKCTD15 - 19q13.11 [CytoView hg19]  KCTD15 - 19q13.11 [CytoView hg38]
Mapping of homologs : NCBIKCTD15 [Mapview hg19]  KCTD15 [Mapview hg38]
OMIM615240   
Gene and transcription
Genbank (Entrez)AI741557 AK025590 AK027901 AK096843 AK225793
RefSeq transcript (Entrez)NM_001129994 NM_001129995 NM_024076
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)KCTD15
Cluster EST : UnigeneHs.606506 [ NCBI ]
CGAP (NCI)Hs.606506
Alternative Splicing GalleryENSG00000153885
Gene ExpressionKCTD15 [ NCBI-GEO ]   KCTD15 [ EBI - ARRAY_EXPRESS ]   KCTD15 [ SEEK ]   KCTD15 [ MEM ]
Gene Expression Viewer (FireBrowse)KCTD15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79047
GTEX Portal (Tissue expression)KCTD15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96SI1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96SI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96SI1
Splice isoforms : SwissVarQ96SI1
PhosPhoSitePlusQ96SI1
Domains : Interpro (EBI)BTB/POZ-like    BTB/POZ_fold    T1-type_BTB   
Domain families : Pfam (Sanger)BTB_2 (PF02214)   
Domain families : Pfam (NCBI)pfam02214   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCTD15
DMDM Disease mutations79047
Blocks (Seattle)KCTD15
SuperfamilyQ96SI1
Human Protein AtlasENSG00000153885
Peptide AtlasQ96SI1
HPRD13765
IPIIPI00942947   IPI00549561   IPI00902568   IPI00234793   
Protein Interaction databases
DIP (DOE-UCLA)Q96SI1
IntAct (EBI)Q96SI1
FunCoupENSG00000153885
BioGRIDKCTD15
STRING (EMBL)KCTD15
ZODIACKCTD15
Ontologies - Pathways
QuickGOQ96SI1
Ontology : AmiGOprotein binding  multicellular organismal development  protein homooligomerization  
Ontology : EGO-EBIprotein binding  multicellular organismal development  protein homooligomerization  
NDEx NetworkKCTD15
Atlas of Cancer Signalling NetworkKCTD15
Wikipedia pathwaysKCTD15
Orthology - Evolution
OrthoDB79047
GeneTree (enSembl)ENSG00000153885
Phylogenetic Trees/Animal Genes : TreeFamKCTD15
HOVERGENQ96SI1
HOGENOMQ96SI1
Homologs : HomoloGeneKCTD15
Homology/Alignments : Family Browser (UCSC)KCTD15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCTD15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCTD15
dbVarKCTD15
ClinVarKCTD15
1000_GenomesKCTD15 
Exome Variant ServerKCTD15
ExAC (Exome Aggregation Consortium)KCTD15 (select the gene name)
Genetic variants : HAPMAP79047
Genomic Variants (DGV)KCTD15 [DGVbeta]
DECIPHER (Syndromes)19:34287751-34306666  ENSG00000153885
CONAN: Copy Number AnalysisKCTD15 
Mutations
ICGC Data PortalKCTD15 
TCGA Data PortalKCTD15 
Broad Tumor PortalKCTD15
OASIS PortalKCTD15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCTD15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCTD15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCTD15
DgiDB (Drug Gene Interaction Database)KCTD15
DoCM (Curated mutations)KCTD15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCTD15 (select a term)
intoGenKCTD15
Cancer3DKCTD15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615240   
Orphanet
MedgenKCTD15
Genetic Testing Registry KCTD15
NextProtQ96SI1 [Medical]
TSGene79047
GENETestsKCTD15
Huge Navigator KCTD15 [HugePedia]
snp3D : Map Gene to Disease79047
BioCentury BCIQKCTD15
ClinGenKCTD15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79047
Chemical/Pharm GKB GenePA134916319
Clinical trialKCTD15
Miscellaneous
canSAR (ICR)KCTD15 (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCTD15
EVEXKCTD15
GoPubMedKCTD15
iHOPKCTD15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:33 CET 2017

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