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KCTD16 (potassium channel tetramerization domain containing 16)

Identity

Alias_namespotassium channel tetramerisation domain containing 16
Alias_symbol (synonym)KIAA1317
Other alias-
HGNC (Hugo) KCTD16
LocusID (NCBI) 57528
Atlas_Id 64821
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 144170873 and ends at 144477381 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCTD16   29244
Cards
Entrez_Gene (NCBI)KCTD16  57528  potassium channel tetramerization domain containing 16
Aliases
GeneCards (Weizmann)KCTD16
Ensembl hg19 (Hinxton)ENSG00000183775 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183775 [Gene_View]  chr5:144170873-144477381 [Contig_View]  KCTD16 [Vega]
ICGC DataPortalENSG00000183775
TCGA cBioPortalKCTD16
AceView (NCBI)KCTD16
Genatlas (Paris)KCTD16
WikiGenes57528
SOURCE (Princeton)KCTD16
Genetics Home Reference (NIH)KCTD16
Genomic and cartography
GoldenPath hg38 (UCSC)KCTD16  -     chr5:144170873-144477381 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCTD16  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblKCTD16 - 5q31.3 [CytoView hg19]  KCTD16 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIKCTD16 [Mapview hg19]  KCTD16 [Mapview hg38]
OMIM613423   
Gene and transcription
Genbank (Entrez)AB037738 AK091723 AK292477 BC036491 BC111962
RefSeq transcript (Entrez)NM_020768
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCTD16
Cluster EST : UnigeneHs.661870 [ NCBI ]
CGAP (NCI)Hs.661870
Alternative Splicing GalleryENSG00000183775
Gene ExpressionKCTD16 [ NCBI-GEO ]   KCTD16 [ EBI - ARRAY_EXPRESS ]   KCTD16 [ SEEK ]   KCTD16 [ MEM ]
Gene Expression Viewer (FireBrowse)KCTD16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57528
GTEX Portal (Tissue expression)KCTD16
Human Protein AtlasENSG00000183775-KCTD16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68DU8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68DU8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68DU8
Splice isoforms : SwissVarQ68DU8
PhosPhoSitePlusQ68DU8
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    T1-type_BTB   
Domain families : Pfam (Sanger)BTB_2 (PF02214)   
Domain families : Pfam (NCBI)pfam02214   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCTD16
DMDM Disease mutations57528
Blocks (Seattle)KCTD16
PDB (SRS)5A15   
PDB (PDBSum)5A15   
PDB (IMB)5A15   
PDB (RSDB)5A15   
Structural Biology KnowledgeBase5A15   
SCOP (Structural Classification of Proteins)5A15   
CATH (Classification of proteins structures)5A15   
SuperfamilyQ68DU8
Human Protein Atlas [tissue]ENSG00000183775-KCTD16 [tissue]
Peptide AtlasQ68DU8
HPRD17175
IPIIPI00002354   
Protein Interaction databases
DIP (DOE-UCLA)Q68DU8
IntAct (EBI)Q68DU8
FunCoupENSG00000183775
BioGRIDKCTD16
STRING (EMBL)KCTD16
ZODIACKCTD16
Ontologies - Pathways
QuickGOQ68DU8
Ontology : AmiGOregulation of G-protein coupled receptor protein signaling pathway  cell junction  presynaptic membrane  receptor complex  postsynaptic membrane  protein homooligomerization  
Ontology : EGO-EBIregulation of G-protein coupled receptor protein signaling pathway  cell junction  presynaptic membrane  receptor complex  postsynaptic membrane  protein homooligomerization  
NDEx NetworkKCTD16
Atlas of Cancer Signalling NetworkKCTD16
Wikipedia pathwaysKCTD16
Orthology - Evolution
OrthoDB57528
GeneTree (enSembl)ENSG00000183775
Phylogenetic Trees/Animal Genes : TreeFamKCTD16
HOVERGENQ68DU8
HOGENOMQ68DU8
Homologs : HomoloGeneKCTD16
Homology/Alignments : Family Browser (UCSC)KCTD16
Gene fusions - Rearrangements
Tumor Fusion PortalKCTD16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCTD16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCTD16
dbVarKCTD16
ClinVarKCTD16
1000_GenomesKCTD16 
Exome Variant ServerKCTD16
ExAC (Exome Aggregation Consortium)ENSG00000183775
GNOMAD BrowserENSG00000183775
Genetic variants : HAPMAP57528
Genomic Variants (DGV)KCTD16 [DGVbeta]
DECIPHERKCTD16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCTD16 
Mutations
ICGC Data PortalKCTD16 
TCGA Data PortalKCTD16 
Broad Tumor PortalKCTD16
OASIS PortalKCTD16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCTD16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCTD16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCTD16
DgiDB (Drug Gene Interaction Database)KCTD16
DoCM (Curated mutations)KCTD16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCTD16 (select a term)
intoGenKCTD16
Cancer3DKCTD16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613423   
Orphanet
DisGeNETKCTD16
MedgenKCTD16
Genetic Testing Registry KCTD16
NextProtQ68DU8 [Medical]
TSGene57528
GENETestsKCTD16
Target ValidationKCTD16
Huge Navigator KCTD16 [HugePedia]
snp3D : Map Gene to Disease57528
BioCentury BCIQKCTD16
ClinGenKCTD16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57528
Chemical/Pharm GKB GenePA134973546
Clinical trialKCTD16
Miscellaneous
canSAR (ICR)KCTD16 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCTD16
EVEXKCTD16
GoPubMedKCTD16
iHOPKCTD16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:34:46 CET 2017

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