Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCTD17 (potassium channel tetramerization domain containing 17)

Identity

Alias_namespotassium channel tetramerisation domain containing 17
Alias_symbol (synonym)FLJ12242
Other alias-
HGNC (Hugo) KCTD17
LocusID (NCBI) 79734
Atlas_Id 64822
Location 22q12.3  [Link to chromosome band 22q12]
Location_base_pair Starts at 37051736 and ends at 37063390 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCTD17   25705
Cards
Entrez_Gene (NCBI)KCTD17  79734  potassium channel tetramerization domain containing 17
Aliases
GeneCards (Weizmann)KCTD17
Ensembl hg19 (Hinxton)ENSG00000100379 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100379 [Gene_View]  chr22:37051736-37063390 [Contig_View]  KCTD17 [Vega]
ICGC DataPortalENSG00000100379
TCGA cBioPortalKCTD17
AceView (NCBI)KCTD17
Genatlas (Paris)KCTD17
WikiGenes79734
SOURCE (Princeton)KCTD17
Genetics Home Reference (NIH)KCTD17
Genomic and cartography
GoldenPath hg38 (UCSC)KCTD17  -     chr22:37051736-37063390 +  22q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCTD17  -     22q12.3   [Description]    (hg19-Feb_2009)
EnsemblKCTD17 - 22q12.3 [CytoView hg19]  KCTD17 - 22q12.3 [CytoView hg38]
Mapping of homologs : NCBIKCTD17 [Mapview hg19]  KCTD17 [Mapview hg38]
OMIM616386   616398   
Gene and transcription
Genbank (Entrez)AA761637 AK022304 AK308720 BC009961 BC025403
RefSeq transcript (Entrez)NM_001282684 NM_001282685 NM_001282686 NM_024681
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCTD17
Cluster EST : UnigeneHs.517597 [ NCBI ]
CGAP (NCI)Hs.517597
Alternative Splicing GalleryENSG00000100379
Gene ExpressionKCTD17 [ NCBI-GEO ]   KCTD17 [ EBI - ARRAY_EXPRESS ]   KCTD17 [ SEEK ]   KCTD17 [ MEM ]
Gene Expression Viewer (FireBrowse)KCTD17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79734
GTEX Portal (Tissue expression)KCTD17
Human Protein AtlasENSG00000100379-KCTD17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5Z5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5Z5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5Z5
Splice isoforms : SwissVarQ8N5Z5
PhosPhoSitePlusQ8N5Z5
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    T1-type_BTB   
Domain families : Pfam (Sanger)BTB_2 (PF02214)   
Domain families : Pfam (NCBI)pfam02214   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCTD17
DMDM Disease mutations79734
Blocks (Seattle)KCTD17
PDB (SRS)5A6R   
PDB (PDBSum)5A6R   
PDB (IMB)5A6R   
PDB (RSDB)5A6R   
Structural Biology KnowledgeBase5A6R   
SCOP (Structural Classification of Proteins)5A6R   
CATH (Classification of proteins structures)5A6R   
SuperfamilyQ8N5Z5
Human Protein Atlas [tissue]ENSG00000100379-KCTD17 [tissue]
Peptide AtlasQ8N5Z5
HPRD07764
IPIIPI00297162   IPI00333463   IPI00935457   IPI01010106   IPI00877638   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5Z5
IntAct (EBI)Q8N5Z5
FunCoupENSG00000100379
BioGRIDKCTD17
STRING (EMBL)KCTD17
ZODIACKCTD17
Ontologies - Pathways
QuickGOQ8N5Z5
Ontology : AmiGOprotein binding  cytoplasm  endoplasmic reticulum  cell projection organization  Cul3-RING ubiquitin ligase complex  protein complex binding  endoplasmic reticulum calcium ion homeostasis  identical protein binding  proteasome-mediated ubiquitin-dependent protein catabolic process  positive regulation of cilium assembly  protein homooligomerization  cullin family protein binding  
Ontology : EGO-EBIprotein binding  cytoplasm  endoplasmic reticulum  cell projection organization  Cul3-RING ubiquitin ligase complex  protein complex binding  endoplasmic reticulum calcium ion homeostasis  identical protein binding  proteasome-mediated ubiquitin-dependent protein catabolic process  positive regulation of cilium assembly  protein homooligomerization  cullin family protein binding  
NDEx NetworkKCTD17
Atlas of Cancer Signalling NetworkKCTD17
Wikipedia pathwaysKCTD17
Orthology - Evolution
OrthoDB79734
GeneTree (enSembl)ENSG00000100379
Phylogenetic Trees/Animal Genes : TreeFamKCTD17
HOVERGENQ8N5Z5
HOGENOMQ8N5Z5
Homologs : HomoloGeneKCTD17
Homology/Alignments : Family Browser (UCSC)KCTD17
Gene fusions - Rearrangements
Fusion: Tumor Portal KCTD17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCTD17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCTD17
dbVarKCTD17
ClinVarKCTD17
1000_GenomesKCTD17 
Exome Variant ServerKCTD17
ExAC (Exome Aggregation Consortium)ENSG00000100379
GNOMAD BrowserENSG00000100379
Genetic variants : HAPMAP79734
Genomic Variants (DGV)KCTD17 [DGVbeta]
DECIPHERKCTD17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCTD17 
Mutations
ICGC Data PortalKCTD17 
TCGA Data PortalKCTD17 
Broad Tumor PortalKCTD17
OASIS PortalKCTD17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCTD17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCTD17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCTD17
DgiDB (Drug Gene Interaction Database)KCTD17
DoCM (Curated mutations)KCTD17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCTD17 (select a term)
intoGenKCTD17
Cancer3DKCTD17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616386    616398   
Orphanet
MedgenKCTD17
Genetic Testing Registry KCTD17
NextProtQ8N5Z5 [Medical]
TSGene79734
GENETestsKCTD17
Target ValidationKCTD17
Huge Navigator KCTD17 [HugePedia]
snp3D : Map Gene to Disease79734
BioCentury BCIQKCTD17
ClinGenKCTD17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79734
Chemical/Pharm GKB GenePA142671638
Clinical trialKCTD17
Miscellaneous
canSAR (ICR)KCTD17 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCTD17
EVEXKCTD17
GoPubMedKCTD17
iHOPKCTD17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:52:15 CET 2017

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