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KCTD18 (potassium channel tetramerization domain containing 18)

Identity

Alias_namespotassium channel tetramerisation domain containing 18
Alias_symbol (synonym)FLJ31322
6530404F10Rik
FLJ37818
Other alias
HGNC (Hugo) KCTD18
LocusID (NCBI) 130535
Atlas_Id 64823
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 201353684 and ends at 201374792 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
H3F3B (17q25.1) / KCTD18 (2q33.1)KCTD18 (2q33.1) / SNED1 (2q37.3)RPL30 (8q22.2) / KCTD18 (2q33.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCTD18   26446
Cards
Entrez_Gene (NCBI)KCTD18  130535  potassium channel tetramerization domain containing 18
Aliases6530404F10Rik
GeneCards (Weizmann)KCTD18
Ensembl hg19 (Hinxton)ENSG00000155729 [Gene_View]  chr2:201353684-201374792 [Contig_View]  KCTD18 [Vega]
Ensembl hg38 (Hinxton)ENSG00000155729 [Gene_View]  chr2:201353684-201374792 [Contig_View]  KCTD18 [Vega]
ICGC DataPortalENSG00000155729
TCGA cBioPortalKCTD18
AceView (NCBI)KCTD18
Genatlas (Paris)KCTD18
WikiGenes130535
SOURCE (Princeton)KCTD18
Genetics Home Reference (NIH)KCTD18
Genomic and cartography
GoldenPath hg19 (UCSC)KCTD18  -     chr2:201353684-201374792 -  2q33.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KCTD18  -     2q33.1   [Description]    (hg38-Dec_2013)
EnsemblKCTD18 - 2q33.1 [CytoView hg19]  KCTD18 - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBIKCTD18 [Mapview hg19]  KCTD18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055884 AK095137 AK290867 BC045189 BC059366
RefSeq transcript (Entrez)NM_152387
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)KCTD18
Cluster EST : UnigeneHs.605775 [ NCBI ]
CGAP (NCI)Hs.605775
Alternative Splicing GalleryENSG00000155729
Gene ExpressionKCTD18 [ NCBI-GEO ]   KCTD18 [ EBI - ARRAY_EXPRESS ]   KCTD18 [ SEEK ]   KCTD18 [ MEM ]
Gene Expression Viewer (FireBrowse)KCTD18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130535
GTEX Portal (Tissue expression)KCTD18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PI47   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PI47  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PI47
Splice isoforms : SwissVarQ6PI47
PhosPhoSitePlusQ6PI47
Domains : Interpro (EBI)BTB/POZ-like    BTB/POZ_fold    T1-type_BTB   
Domain families : Pfam (Sanger)BTB_2 (PF02214)   
Domain families : Pfam (NCBI)pfam02214   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCTD18
DMDM Disease mutations130535
Blocks (Seattle)KCTD18
SuperfamilyQ6PI47
Human Protein AtlasENSG00000155729
Peptide AtlasQ6PI47
HPRD08098
IPIIPI00043495   IPI00784732   IPI00785035   
Protein Interaction databases
DIP (DOE-UCLA)Q6PI47
IntAct (EBI)Q6PI47
FunCoupENSG00000155729
BioGRIDKCTD18
STRING (EMBL)KCTD18
ZODIACKCTD18
Ontologies - Pathways
QuickGOQ6PI47
Ontology : AmiGOprotein homooligomerization  
Ontology : EGO-EBIprotein homooligomerization  
NDEx NetworkKCTD18
Atlas of Cancer Signalling NetworkKCTD18
Wikipedia pathwaysKCTD18
Orthology - Evolution
OrthoDB130535
GeneTree (enSembl)ENSG00000155729
Phylogenetic Trees/Animal Genes : TreeFamKCTD18
HOVERGENQ6PI47
HOGENOMQ6PI47
Homologs : HomoloGeneKCTD18
Homology/Alignments : Family Browser (UCSC)KCTD18
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCTD18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCTD18
dbVarKCTD18
ClinVarKCTD18
1000_GenomesKCTD18 
Exome Variant ServerKCTD18
ExAC (Exome Aggregation Consortium)KCTD18 (select the gene name)
Genetic variants : HAPMAP130535
Genomic Variants (DGV)KCTD18 [DGVbeta]
DECIPHER (Syndromes)2:201353684-201374792  ENSG00000155729
CONAN: Copy Number AnalysisKCTD18 
Mutations
ICGC Data PortalKCTD18 
TCGA Data PortalKCTD18 
Broad Tumor PortalKCTD18
OASIS PortalKCTD18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCTD18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCTD18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCTD18
DgiDB (Drug Gene Interaction Database)KCTD18
DoCM (Curated mutations)KCTD18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCTD18 (select a term)
intoGenKCTD18
Cancer3DKCTD18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKCTD18
Genetic Testing Registry KCTD18
NextProtQ6PI47 [Medical]
TSGene130535
GENETestsKCTD18
Huge Navigator KCTD18 [HugePedia]
snp3D : Map Gene to Disease130535
BioCentury BCIQKCTD18
ClinGenKCTD18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD130535
Chemical/Pharm GKB GenePA142671639
Clinical trialKCTD18
Miscellaneous
canSAR (ICR)KCTD18 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCTD18
EVEXKCTD18
GoPubMedKCTD18
iHOPKCTD18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:34 CET 2017

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