Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCTD19 (potassium channel tetramerization domain containing 19)

Identity

Alias_namespotassium channel tetramerisation domain containing 19
Alias_symbol (synonym)FLJ40162
Other alias-
HGNC (Hugo) KCTD19
LocusID (NCBI) 146212
Atlas_Id 64824
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67289432 and ends at 67326771 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AP3D1 (19p13.3) / KCTD19 (16q22.1)DDX19B (16q22.1) / KCTD19 (16q22.1)KCTD19 (16q22.1) / PRKAG1 (12q13.12)
DDX19B KCTD19AP3D1 KCTD19

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCTD19   24753
Cards
Entrez_Gene (NCBI)KCTD19  146212  potassium channel tetramerization domain containing 19
Aliases
GeneCards (Weizmann)KCTD19
Ensembl hg19 (Hinxton)ENSG00000168676 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168676 [Gene_View]  chr16:67289432-67326771 [Contig_View]  KCTD19 [Vega]
ICGC DataPortalENSG00000168676
TCGA cBioPortalKCTD19
AceView (NCBI)KCTD19
Genatlas (Paris)KCTD19
WikiGenes146212
SOURCE (Princeton)KCTD19
Genetics Home Reference (NIH)KCTD19
Genomic and cartography
GoldenPath hg38 (UCSC)KCTD19  -     chr16:67289432-67326771 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCTD19  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblKCTD19 - 16q22.1 [CytoView hg19]  KCTD19 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIKCTD19 [Mapview hg19]  KCTD19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097481 AK302567 AK302748 BC070103 BC094790
RefSeq transcript (Entrez)NM_001100915
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCTD19
Cluster EST : UnigeneHs.299127 [ NCBI ]
CGAP (NCI)Hs.299127
Alternative Splicing GalleryENSG00000168676
Gene ExpressionKCTD19 [ NCBI-GEO ]   KCTD19 [ EBI - ARRAY_EXPRESS ]   KCTD19 [ SEEK ]   KCTD19 [ MEM ]
Gene Expression Viewer (FireBrowse)KCTD19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146212
GTEX Portal (Tissue expression)KCTD19
Human Protein AtlasENSG00000168676-KCTD19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17RG1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17RG1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17RG1
Splice isoforms : SwissVarQ17RG1
PhosPhoSitePlusQ17RG1
Domains : Interpro (EBI)SKP1/BTB/POZ    T1-type_BTB   
Domain families : Pfam (Sanger)BTB_2 (PF02214)   
Domain families : Pfam (NCBI)pfam02214   
Conserved Domain (NCBI)KCTD19
DMDM Disease mutations146212
Blocks (Seattle)KCTD19
SuperfamilyQ17RG1
Human Protein Atlas [tissue]ENSG00000168676-KCTD19 [tissue]
Peptide AtlasQ17RG1
IPIIPI00155475   
Protein Interaction databases
DIP (DOE-UCLA)Q17RG1
IntAct (EBI)Q17RG1
FunCoupENSG00000168676
BioGRIDKCTD19
STRING (EMBL)KCTD19
ZODIACKCTD19
Ontologies - Pathways
QuickGOQ17RG1
Ontology : AmiGOprotein homooligomerization  
Ontology : EGO-EBIprotein homooligomerization  
NDEx NetworkKCTD19
Atlas of Cancer Signalling NetworkKCTD19
Wikipedia pathwaysKCTD19
Orthology - Evolution
OrthoDB146212
GeneTree (enSembl)ENSG00000168676
Phylogenetic Trees/Animal Genes : TreeFamKCTD19
HOVERGENQ17RG1
HOGENOMQ17RG1
Homologs : HomoloGeneKCTD19
Homology/Alignments : Family Browser (UCSC)KCTD19
Gene fusions - Rearrangements
Fusion: TCGADDX19B KCTD19
Fusion: TCGAAP3D1 KCTD19
Fusion: Tumor Portal KCTD19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCTD19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCTD19
dbVarKCTD19
ClinVarKCTD19
1000_GenomesKCTD19 
Exome Variant ServerKCTD19
ExAC (Exome Aggregation Consortium)ENSG00000168676
GNOMAD BrowserENSG00000168676
Genetic variants : HAPMAP146212
Genomic Variants (DGV)KCTD19 [DGVbeta]
DECIPHERKCTD19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCTD19 
Mutations
ICGC Data PortalKCTD19 
TCGA Data PortalKCTD19 
Broad Tumor PortalKCTD19
OASIS PortalKCTD19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCTD19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCTD19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCTD19
DgiDB (Drug Gene Interaction Database)KCTD19
DoCM (Curated mutations)KCTD19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCTD19 (select a term)
intoGenKCTD19
Cancer3DKCTD19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKCTD19
Genetic Testing Registry KCTD19
NextProtQ17RG1 [Medical]
TSGene146212
GENETestsKCTD19
Target ValidationKCTD19
Huge Navigator KCTD19 [HugePedia]
snp3D : Map Gene to Disease146212
BioCentury BCIQKCTD19
ClinGenKCTD19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146212
Chemical/Pharm GKB GenePA142671640
Clinical trialKCTD19
Miscellaneous
canSAR (ICR)KCTD19 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCTD19
EVEXKCTD19
GoPubMedKCTD19
iHOPKCTD19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:52:15 CET 2017

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