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KCTD20 (potassium channel tetramerization domain containing 20)

Identity

Alias (NCBI)C6orf69
dJ108K11.3
HGNC (Hugo) KCTD20
HGNC Alias symbdJ108K11.3
MGC14254
HGNC Previous nameC6orf69
HGNC Previous namechromosome 6 open reading frame 69
 potassium channel tetramerisation domain containing 20
LocusID (NCBI) 222658
Atlas_Id 57083
Location 6p21.31  [Link to chromosome band 6p21]
Location_base_pair Starts at 36443000 and ends at 36491141 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KCTD20 (6p21.31) / ETV7 (6p21.31)KCTD20 (6p21.31) / JARID2 (6p22.3)KCTD20 (6p21.31) / STK38 (6p21.31)
PARP12 (7q34) / KCTD20 (6p21.31)USP49 (6p21.1) / KCTD20 (6p21.31)ZFAND3 (6p21.2) / KCTD20 (6p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)KCTD20   21052
Cards
Entrez_Gene (NCBI)KCTD20    potassium channel tetramerization domain containing 20
AliasesC6orf69; dJ108K11.3
GeneCards (Weizmann)KCTD20
Ensembl hg19 (Hinxton)ENSG00000112078 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112078 [Gene_View]  ENSG00000112078 [Sequence]  chr6:36443000-36491141 [Contig_View]  KCTD20 [Vega]
ICGC DataPortalENSG00000112078
TCGA cBioPortalKCTD20
AceView (NCBI)KCTD20
Genatlas (Paris)KCTD20
SOURCE (Princeton)KCTD20
Genetics Home Reference (NIH)KCTD20
Genomic and cartography
GoldenPath hg38 (UCSC)KCTD20  -     chr6:36443000-36491141 +  6p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCTD20  -     6p21.31   [Description]    (hg19-Feb_2009)
GoldenPathKCTD20 - 6p21.31 [CytoView hg19]  KCTD20 - 6p21.31 [CytoView hg38]
ImmunoBaseENSG00000112078
Genome Data Viewer NCBIKCTD20 [Mapview hg19]  
OMIM615932   
Gene and transcription
Genbank (Entrez)AK295717 AK302861 AK304377 AK316456 AL049282
RefSeq transcript (Entrez)NM_001286579 NM_001286580 NM_173562
Consensus coding sequences : CCDS (NCBI)KCTD20
Gene ExpressionKCTD20 [ NCBI-GEO ]   KCTD20 [ EBI - ARRAY_EXPRESS ]   KCTD20 [ SEEK ]   KCTD20 [ MEM ]
Gene Expression Viewer (FireBrowse)KCTD20 [ Firebrowse - Broad ]
GenevisibleExpression of KCTD20 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)222658
GTEX Portal (Tissue expression)KCTD20
Human Protein AtlasENSG00000112078-KCTD20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5Y7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z5Y7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z5Y7
PhosPhoSitePlusQ7Z5Y7
Domains : Interpro (EBI)BTB/POZ_dom    BTBD10/KCTD20    BTBD10/KCTD20_BTB/POZ    SKP1/BTB/POZ_sf   
Domain families : Pfam (Sanger)BTB_3 (PF16017)   
Domain families : Pfam (NCBI)pfam16017   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCTD20
SuperfamilyQ7Z5Y7
AlphaFold pdb e-kbQ7Z5Y7   
Human Protein Atlas [tissue]ENSG00000112078-KCTD20 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5Y7
IntAct (EBI)Q7Z5Y7
BioGRIDKCTD20
STRING (EMBL)KCTD20
ZODIACKCTD20
Ontologies - Pathways
QuickGOQ7Z5Y7
Ontology : AmiGOcytoplasm  cytoplasm  positive regulation of phosphorylation  positive regulation of phosphorylation  
Ontology : EGO-EBIcytoplasm  cytoplasm  positive regulation of phosphorylation  positive regulation of phosphorylation  
NDEx NetworkKCTD20
Atlas of Cancer Signalling NetworkKCTD20
Wikipedia pathwaysKCTD20
Orthology - Evolution
OrthoDB222658
GeneTree (enSembl)ENSG00000112078
Phylogenetic Trees/Animal Genes : TreeFamKCTD20
Homologs : HomoloGeneKCTD20
Homology/Alignments : Family Browser (UCSC)KCTD20
Gene fusions - Rearrangements
Fusion : QuiverKCTD20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCTD20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCTD20
dbVarKCTD20
ClinVarKCTD20
MonarchKCTD20
1000_GenomesKCTD20 
Exome Variant ServerKCTD20
GNOMAD BrowserENSG00000112078
Varsome BrowserKCTD20
ACMGKCTD20 variants
VarityQ7Z5Y7
Genomic Variants (DGV)KCTD20 [DGVbeta]
DECIPHERKCTD20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCTD20 
Mutations
ICGC Data PortalKCTD20 
TCGA Data PortalKCTD20 
Broad Tumor PortalKCTD20
OASIS PortalKCTD20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCTD20  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DKCTD20
Mutations and Diseases : HGMDKCTD20
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaKCTD20
DgiDB (Drug Gene Interaction Database)KCTD20
DoCM (Curated mutations)KCTD20
CIViC (Clinical Interpretations of Variants in Cancer)KCTD20
Cancer3DKCTD20
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615932   
Orphanet
DisGeNETKCTD20
MedgenKCTD20
Genetic Testing Registry KCTD20
NextProtQ7Z5Y7 [Medical]
GENETestsKCTD20
Target ValidationKCTD20
Huge Navigator KCTD20 [HugePedia]
ClinGenKCTD20
Clinical trials, drugs, therapy
MyCancerGenomeKCTD20
Protein Interactions : CTDKCTD20
Pharm GKB GenePA134913479
PharosQ7Z5Y7
Clinical trialKCTD20
Miscellaneous
canSAR (ICR)KCTD20
HarmonizomeKCTD20
DataMed IndexKCTD20
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXKCTD20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:14:48 CEST 2021
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