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KCTD21 (potassium channel tetramerization domain containing 21)

Identity

Alias_namespotassium channel tetramerisation domain containing 21
Alias_symbol (synonym)KCASH2
Other alias
HGNC (Hugo) KCTD21
LocusID (NCBI) 283219
Atlas_Id 52333
Location 11q14.1  [Link to chromosome band 11q14]
Location_base_pair Starts at 78171244 and ends at 78188629 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KCTD21 (11q14.1) / KCTD21 (11q14.1)RSF1 (11q14.1) / KCTD21 (11q14.1)RSF1 11q14.1 / KCTD21 11q14.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCTD21   27452
Cards
Entrez_Gene (NCBI)KCTD21  283219  potassium channel tetramerization domain containing 21
AliasesKCASH2
GeneCards (Weizmann)KCTD21
Ensembl hg19 (Hinxton)ENSG00000188997 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188997 [Gene_View]  chr11:78171244-78188629 [Contig_View]  KCTD21 [Vega]
ICGC DataPortalENSG00000188997
TCGA cBioPortalKCTD21
AceView (NCBI)KCTD21
Genatlas (Paris)KCTD21
WikiGenes283219
SOURCE (Princeton)KCTD21
Genetics Home Reference (NIH)KCTD21
Genomic and cartography
GoldenPath hg38 (UCSC)KCTD21  -     chr11:78171244-78188629 -  11q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCTD21  -     11q14.1   [Description]    (hg19-Feb_2009)
EnsemblKCTD21 - 11q14.1 [CytoView hg19]  KCTD21 - 11q14.1 [CytoView hg38]
Mapping of homologs : NCBIKCTD21 [Mapview hg19]  KCTD21 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095233 AK300320 BC036058 DC342183
RefSeq transcript (Entrez)NM_001029859
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCTD21
Cluster EST : UnigeneHs.528439 [ NCBI ]
CGAP (NCI)Hs.528439
Alternative Splicing GalleryENSG00000188997
Gene ExpressionKCTD21 [ NCBI-GEO ]   KCTD21 [ EBI - ARRAY_EXPRESS ]   KCTD21 [ SEEK ]   KCTD21 [ MEM ]
Gene Expression Viewer (FireBrowse)KCTD21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283219
GTEX Portal (Tissue expression)KCTD21
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G0X4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G0X4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G0X4
Splice isoforms : SwissVarQ4G0X4
PhosPhoSitePlusQ4G0X4
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    T1-type_BTB   
Domain families : Pfam (Sanger)BTB_2 (PF02214)   
Domain families : Pfam (NCBI)pfam02214   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCTD21
DMDM Disease mutations283219
Blocks (Seattle)KCTD21
SuperfamilyQ4G0X4
Human Protein AtlasENSG00000188997
Peptide AtlasQ4G0X4
HPRD18763
IPIIPI00400983   IPI00982618   IPI00980966   IPI00982000   IPI00984630   IPI00981496   
Protein Interaction databases
DIP (DOE-UCLA)Q4G0X4
IntAct (EBI)Q4G0X4
FunCoupENSG00000188997
BioGRIDKCTD21
STRING (EMBL)KCTD21
ZODIACKCTD21
Ontologies - Pathways
QuickGOQ4G0X4
Ontology : AmiGOprotein homooligomerization  
Ontology : EGO-EBIprotein homooligomerization  
NDEx NetworkKCTD21
Atlas of Cancer Signalling NetworkKCTD21
Wikipedia pathwaysKCTD21
Orthology - Evolution
OrthoDB283219
GeneTree (enSembl)ENSG00000188997
Phylogenetic Trees/Animal Genes : TreeFamKCTD21
HOVERGENQ4G0X4
HOGENOMQ4G0X4
Homologs : HomoloGeneKCTD21
Homology/Alignments : Family Browser (UCSC)KCTD21
Gene fusions - Rearrangements
Fusion : MitelmanRSF1/KCTD21 [11q14.1/11q14.1]  [t(11;11)(q14;q14)]  
Fusion: TCGARSF1 11q14.1 KCTD21 11q14.1 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCTD21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCTD21
dbVarKCTD21
ClinVarKCTD21
1000_GenomesKCTD21 
Exome Variant ServerKCTD21
ExAC (Exome Aggregation Consortium)KCTD21 (select the gene name)
Genetic variants : HAPMAP283219
Genomic Variants (DGV)KCTD21 [DGVbeta]
DECIPHERKCTD21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCTD21 
Mutations
ICGC Data PortalKCTD21 
TCGA Data PortalKCTD21 
Broad Tumor PortalKCTD21
OASIS PortalKCTD21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCTD21  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCTD21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCTD21
DgiDB (Drug Gene Interaction Database)KCTD21
DoCM (Curated mutations)KCTD21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCTD21 (select a term)
intoGenKCTD21
Cancer3DKCTD21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKCTD21
Genetic Testing Registry KCTD21
NextProtQ4G0X4 [Medical]
TSGene283219
GENETestsKCTD21
Huge Navigator KCTD21 [HugePedia]
snp3D : Map Gene to Disease283219
BioCentury BCIQKCTD21
ClinGenKCTD21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283219
Chemical/Pharm GKB GenePA145148689
Clinical trialKCTD21
Miscellaneous
canSAR (ICR)KCTD21 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCTD21
EVEXKCTD21
GoPubMedKCTD21
iHOPKCTD21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:21:21 CEST 2017

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