Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KCTD4 (potassium channel tetramerization domain containing 4)

Identity

Alias_namespotassium channel tetramerisation domain containing 4
Alias_symbol (synonym)bA321C24.3
Other alias
HGNC (Hugo) KCTD4
LocusID (NCBI) 386618
Atlas_Id 64827
Location 13q14.12  [Link to chromosome band 13q14]
Location_base_pair Starts at 45192853 and ends at 45201040 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCTD4   23227
Cards
Entrez_Gene (NCBI)KCTD4  386618  potassium channel tetramerization domain containing 4
AliasesbA321C24.3
GeneCards (Weizmann)KCTD4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:45192853-45201040 [Contig_View]  KCTD4 [Vega]
TCGA cBioPortalKCTD4
AceView (NCBI)KCTD4
Genatlas (Paris)KCTD4
WikiGenes386618
SOURCE (Princeton)KCTD4
Genetics Home Reference (NIH)KCTD4
Genomic and cartography
GoldenPath hg38 (UCSC)KCTD4  -     chr13:45192853-45201040 -  13q14.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCTD4  -     13q14.12   [Description]    (hg19-Feb_2009)
EnsemblKCTD4 - 13q14.12 [CytoView hg19]  KCTD4 - 13q14.12 [CytoView hg38]
Mapping of homologs : NCBIKCTD4 [Mapview hg19]  KCTD4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK290675 BC018063 BQ575935 DA683655 DB557284
RefSeq transcript (Entrez)NM_198404
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCTD4
Cluster EST : UnigeneHs.693242 [ NCBI ]
CGAP (NCI)Hs.693242
Gene ExpressionKCTD4 [ NCBI-GEO ]   KCTD4 [ EBI - ARRAY_EXPRESS ]   KCTD4 [ SEEK ]   KCTD4 [ MEM ]
Gene Expression Viewer (FireBrowse)KCTD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)386618
GTEX Portal (Tissue expression)KCTD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVF5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVF5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVF5
Splice isoforms : SwissVarQ8WVF5
PhosPhoSitePlusQ8WVF5
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    T1-type_BTB   
Domain families : Pfam (Sanger)BTB_2 (PF02214)   
Domain families : Pfam (NCBI)pfam02214   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCTD4
DMDM Disease mutations386618
Blocks (Seattle)KCTD4
SuperfamilyQ8WVF5
Peptide AtlasQ8WVF5
HPRD13767
IPIIPI00291440   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVF5
IntAct (EBI)Q8WVF5
BioGRIDKCTD4
STRING (EMBL)KCTD4
ZODIACKCTD4
Ontologies - Pathways
QuickGOQ8WVF5
Ontology : AmiGOprotein binding  protein homooligomerization  
Ontology : EGO-EBIprotein binding  protein homooligomerization  
NDEx NetworkKCTD4
Atlas of Cancer Signalling NetworkKCTD4
Wikipedia pathwaysKCTD4
Orthology - Evolution
OrthoDB386618
Phylogenetic Trees/Animal Genes : TreeFamKCTD4
HOVERGENQ8WVF5
HOGENOMQ8WVF5
Homologs : HomoloGeneKCTD4
Homology/Alignments : Family Browser (UCSC)KCTD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCTD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCTD4
dbVarKCTD4
ClinVarKCTD4
1000_GenomesKCTD4 
Exome Variant ServerKCTD4
ExAC (Exome Aggregation Consortium)KCTD4 (select the gene name)
Genetic variants : HAPMAP386618
Genomic Variants (DGV)KCTD4 [DGVbeta]
DECIPHERKCTD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCTD4 
Mutations
ICGC Data PortalKCTD4 
TCGA Data PortalKCTD4 
Broad Tumor PortalKCTD4
OASIS PortalKCTD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCTD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCTD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCTD4
DgiDB (Drug Gene Interaction Database)KCTD4
DoCM (Curated mutations)KCTD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCTD4 (select a term)
intoGenKCTD4
Cancer3DKCTD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKCTD4
Genetic Testing Registry KCTD4
NextProtQ8WVF5 [Medical]
TSGene386618
GENETestsKCTD4
Target ValidationKCTD4
Huge Navigator KCTD4 [HugePedia]
snp3D : Map Gene to Disease386618
BioCentury BCIQKCTD4
ClinGenKCTD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD386618
Chemical/Pharm GKB GenePA134880839
Clinical trialKCTD4
Miscellaneous
canSAR (ICR)KCTD4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCTD4
EVEXKCTD4
GoPubMedKCTD4
iHOPKCTD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:18:16 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.