Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCTD5 (potassium channel tetramerization domain containing 5)

Identity

Alias_namespotassium channel tetramerisation domain containing 5
Alias_symbol (synonym)FLJ20040
Other alias-
HGNC (Hugo) KCTD5
LocusID (NCBI) 54442
Atlas_Id 64828
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2732495 and ends at 2759031 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KCTD5 (16p13.3) / NDE1 (16p13.11)KCTD5 (16p13.3) / SPTBN2 (11q13.2)SPTBN2 (11q13.2) / KCTD5 (16p13.3)
SRRM2 (16p13.3) / KCTD5 (16p13.3)ZNF263 (16p13.3) / KCTD5 (16p13.3)SRRM2 KCTD5
ZNF263 KCTD5

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCTD5   21423
Cards
Entrez_Gene (NCBI)KCTD5  54442  potassium channel tetramerization domain containing 5
Aliases
GeneCards (Weizmann)KCTD5
Ensembl hg19 (Hinxton)ENSG00000167977 [Gene_View]  chr16:2732495-2759031 [Contig_View]  KCTD5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167977 [Gene_View]  chr16:2732495-2759031 [Contig_View]  KCTD5 [Vega]
ICGC DataPortalENSG00000167977
TCGA cBioPortalKCTD5
AceView (NCBI)KCTD5
Genatlas (Paris)KCTD5
WikiGenes54442
SOURCE (Princeton)KCTD5
Genetics Home Reference (NIH)KCTD5
Genomic and cartography
GoldenPath hg19 (UCSC)KCTD5  -     chr16:2732495-2759031 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KCTD5  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblKCTD5 - 16p13.3 [CytoView hg19]  KCTD5 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIKCTD5 [Mapview hg19]  KCTD5 [Mapview hg38]
OMIM611285   
Gene and transcription
Genbank (Entrez)AK000047 BC007314 DA134449
RefSeq transcript (Entrez)NM_018992
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)KCTD5
Cluster EST : UnigeneHs.61960 [ NCBI ]
CGAP (NCI)Hs.61960
Alternative Splicing GalleryENSG00000167977
Gene ExpressionKCTD5 [ NCBI-GEO ]   KCTD5 [ EBI - ARRAY_EXPRESS ]   KCTD5 [ SEEK ]   KCTD5 [ MEM ]
Gene Expression Viewer (FireBrowse)KCTD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54442
GTEX Portal (Tissue expression)KCTD5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXV2
Splice isoforms : SwissVarQ9NXV2
PhosPhoSitePlusQ9NXV2
Domains : Interpro (EBI)BTB/POZ-like    BTB/POZ_fold    T1-type_BTB   
Domain families : Pfam (Sanger)BTB_2 (PF02214)   
Domain families : Pfam (NCBI)pfam02214   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCTD5
DMDM Disease mutations54442
Blocks (Seattle)KCTD5
PDB (SRS)3DRX    3DRY    3DRZ   
PDB (PDBSum)3DRX    3DRY    3DRZ   
PDB (IMB)3DRX    3DRY    3DRZ   
PDB (RSDB)3DRX    3DRY    3DRZ   
Structural Biology KnowledgeBase3DRX    3DRY    3DRZ   
SCOP (Structural Classification of Proteins)3DRX    3DRY    3DRZ   
CATH (Classification of proteins structures)3DRX    3DRY    3DRZ   
SuperfamilyQ9NXV2
Human Protein AtlasENSG00000167977
Peptide AtlasQ9NXV2
HPRD13768
IPIIPI00004506   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXV2
IntAct (EBI)Q9NXV2
FunCoupENSG00000167977
BioGRIDKCTD5
STRING (EMBL)KCTD5
ZODIACKCTD5
Ontologies - Pathways
QuickGOQ9NXV2
Ontology : AmiGOprotein binding  nucleus  cytosol  viral process  protein complex binding  protein homooligomerization  
Ontology : EGO-EBIprotein binding  nucleus  cytosol  viral process  protein complex binding  protein homooligomerization  
NDEx NetworkKCTD5
Atlas of Cancer Signalling NetworkKCTD5
Wikipedia pathwaysKCTD5
Orthology - Evolution
OrthoDB54442
GeneTree (enSembl)ENSG00000167977
Phylogenetic Trees/Animal Genes : TreeFamKCTD5
HOVERGENQ9NXV2
HOGENOMQ9NXV2
Homologs : HomoloGeneKCTD5
Homology/Alignments : Family Browser (UCSC)KCTD5
Gene fusions - Rearrangements
Fusion: TCGASRRM2 KCTD5
Fusion: TCGAZNF263 KCTD5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCTD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCTD5
dbVarKCTD5
ClinVarKCTD5
1000_GenomesKCTD5 
Exome Variant ServerKCTD5
ExAC (Exome Aggregation Consortium)KCTD5 (select the gene name)
Genetic variants : HAPMAP54442
Genomic Variants (DGV)KCTD5 [DGVbeta]
DECIPHER (Syndromes)16:2732495-2759031  ENSG00000167977
CONAN: Copy Number AnalysisKCTD5 
Mutations
ICGC Data PortalKCTD5 
TCGA Data PortalKCTD5 
Broad Tumor PortalKCTD5
OASIS PortalKCTD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCTD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCTD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCTD5
DgiDB (Drug Gene Interaction Database)KCTD5
DoCM (Curated mutations)KCTD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCTD5 (select a term)
intoGenKCTD5
Cancer3DKCTD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611285   
Orphanet
MedgenKCTD5
Genetic Testing Registry KCTD5
NextProtQ9NXV2 [Medical]
TSGene54442
GENETestsKCTD5
Huge Navigator KCTD5 [HugePedia]
snp3D : Map Gene to Disease54442
BioCentury BCIQKCTD5
ClinGenKCTD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54442
Chemical/Pharm GKB GenePA134923177
Clinical trialKCTD5
Miscellaneous
canSAR (ICR)KCTD5 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCTD5
EVEXKCTD5
GoPubMedKCTD5
iHOPKCTD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:35 CET 2017

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