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KCTD6 (potassium channel tetramerization domain containing 6)

Identity

Alias_namespotassium channel tetramerisation domain containing 6
Alias_symbol (synonym)MGC27385
KCASH3
Other alias
HGNC (Hugo) KCTD6
LocusID (NCBI) 200845
Atlas_Id 52331
Location 3p14.3  [Link to chromosome band 3p14]
Location_base_pair Starts at 58477823 and ends at 58488087 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCTD6   22235
Cards
Entrez_Gene (NCBI)KCTD6  200845  potassium channel tetramerization domain containing 6
AliasesKCASH3
GeneCards (Weizmann)KCTD6
Ensembl hg19 (Hinxton)ENSG00000168301 [Gene_View]  chr3:58477823-58488087 [Contig_View]  KCTD6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168301 [Gene_View]  chr3:58477823-58488087 [Contig_View]  KCTD6 [Vega]
ICGC DataPortalENSG00000168301
TCGA cBioPortalKCTD6
AceView (NCBI)KCTD6
Genatlas (Paris)KCTD6
WikiGenes200845
SOURCE (Princeton)KCTD6
Genetics Home Reference (NIH)KCTD6
Genomic and cartography
GoldenPath hg19 (UCSC)KCTD6  -     chr3:58477823-58488087 +  3p14.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KCTD6  -     3p14.3   [Description]    (hg38-Dec_2013)
EnsemblKCTD6 - 3p14.3 [CytoView hg19]  KCTD6 - 3p14.3 [CytoView hg38]
Mapping of homologs : NCBIKCTD6 [Mapview hg19]  KCTD6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA721100 AK027572 AK074934 AK075297 BC022893
RefSeq transcript (Entrez)NM_001128214 NM_153331
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)KCTD6
Cluster EST : UnigeneHs.13982 [ NCBI ]
CGAP (NCI)Hs.13982
Alternative Splicing GalleryENSG00000168301
Gene ExpressionKCTD6 [ NCBI-GEO ]   KCTD6 [ EBI - ARRAY_EXPRESS ]   KCTD6 [ SEEK ]   KCTD6 [ MEM ]
Gene Expression Viewer (FireBrowse)KCTD6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200845
GTEX Portal (Tissue expression)KCTD6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NC69   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NC69  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NC69
Splice isoforms : SwissVarQ8NC69
PhosPhoSitePlusQ8NC69
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    T1-type_BTB   
Domain families : Pfam (Sanger)BTB_2 (PF02214)   
Domain families : Pfam (NCBI)pfam02214   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCTD6
DMDM Disease mutations200845
Blocks (Seattle)KCTD6
SuperfamilyQ8NC69
Human Protein AtlasENSG00000168301
Peptide AtlasQ8NC69
HPRD13769
IPIIPI00171437   IPI00947042   IPI01011582   
Protein Interaction databases
DIP (DOE-UCLA)Q8NC69
IntAct (EBI)Q8NC69
FunCoupENSG00000168301
BioGRIDKCTD6
STRING (EMBL)KCTD6
ZODIACKCTD6
Ontologies - Pathways
QuickGOQ8NC69
Ontology : AmiGOprotein binding  ankyrin binding  protein homooligomerization  
Ontology : EGO-EBIprotein binding  ankyrin binding  protein homooligomerization  
NDEx NetworkKCTD6
Atlas of Cancer Signalling NetworkKCTD6
Wikipedia pathwaysKCTD6
Orthology - Evolution
OrthoDB200845
GeneTree (enSembl)ENSG00000168301
Phylogenetic Trees/Animal Genes : TreeFamKCTD6
HOVERGENQ8NC69
HOGENOMQ8NC69
Homologs : HomoloGeneKCTD6
Homology/Alignments : Family Browser (UCSC)KCTD6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCTD6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCTD6
dbVarKCTD6
ClinVarKCTD6
1000_GenomesKCTD6 
Exome Variant ServerKCTD6
ExAC (Exome Aggregation Consortium)KCTD6 (select the gene name)
Genetic variants : HAPMAP200845
Genomic Variants (DGV)KCTD6 [DGVbeta]
DECIPHER (Syndromes)3:58477823-58488087  ENSG00000168301
CONAN: Copy Number AnalysisKCTD6 
Mutations
ICGC Data PortalKCTD6 
TCGA Data PortalKCTD6 
Broad Tumor PortalKCTD6
OASIS PortalKCTD6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCTD6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCTD6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCTD6
DgiDB (Drug Gene Interaction Database)KCTD6
DoCM (Curated mutations)KCTD6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCTD6 (select a term)
intoGenKCTD6
Cancer3DKCTD6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKCTD6
Genetic Testing Registry KCTD6
NextProtQ8NC69 [Medical]
TSGene200845
GENETestsKCTD6
Huge Navigator KCTD6 [HugePedia]
snp3D : Map Gene to Disease200845
BioCentury BCIQKCTD6
ClinGenKCTD6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200845
Chemical/Pharm GKB GenePA134918095
Clinical trialKCTD6
Miscellaneous
canSAR (ICR)KCTD6 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCTD6
EVEXKCTD6
GoPubMedKCTD6
iHOPKCTD6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:05:59 CEST 2017

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