Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCTD7 (potassium channel tetramerization domain containing 7)

Identity

Alias_namespotassium channel tetramerisation domain containing 7
Alias_symbol (synonym)FLJ32069
EPM3
CLN14
Other alias
HGNC (Hugo) KCTD7
LocusID (NCBI) 154881
Atlas_Id 64829
Location 7q11.21  [Link to chromosome band 7q11]
Location_base_pair Starts at 66093868 and ends at 66108216 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DOCK2 (5q35.1) / KCTD7 (7q11.21)KCTD7 (7q11.21) / C6orf62 (6p22.3)KCTD7 (7q11.21) / CST3 (20p11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCTD7   21957
LRG (Locus Reference Genomic)LRG_835
Cards
Entrez_Gene (NCBI)KCTD7  154881  potassium channel tetramerization domain containing 7
AliasesCLN14; EPM3
GeneCards (Weizmann)KCTD7
Ensembl hg19 (Hinxton)ENSG00000243335 [Gene_View]  chr7:66093868-66108216 [Contig_View]  KCTD7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000243335 [Gene_View]  chr7:66093868-66108216 [Contig_View]  KCTD7 [Vega]
ICGC DataPortalENSG00000243335
TCGA cBioPortalKCTD7
AceView (NCBI)KCTD7
Genatlas (Paris)KCTD7
WikiGenes154881
SOURCE (Princeton)KCTD7
Genetics Home Reference (NIH)KCTD7
Genomic and cartography
GoldenPath hg19 (UCSC)KCTD7  -     chr7:66093868-66108216 +  7q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KCTD7  -     7q11.21   [Description]    (hg38-Dec_2013)
EnsemblKCTD7 - 7q11.21 [CytoView hg19]  KCTD7 - 7q11.21 [CytoView hg38]
Mapping of homologs : NCBIKCTD7 [Mapview hg19]  KCTD7 [Mapview hg38]
OMIM611725   611726   
Gene and transcription
Genbank (Entrez)AK055201 AK056631 BC042482 BU682845 BY795857
RefSeq transcript (Entrez)NM_001167961 NM_153033
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_028110 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)KCTD7
Cluster EST : UnigeneHs.546627 [ NCBI ]
CGAP (NCI)Hs.546627
Alternative Splicing GalleryENSG00000243335
Gene ExpressionKCTD7 [ NCBI-GEO ]   KCTD7 [ EBI - ARRAY_EXPRESS ]   KCTD7 [ SEEK ]   KCTD7 [ MEM ]
Gene Expression Viewer (FireBrowse)KCTD7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)154881
GTEX Portal (Tissue expression)KCTD7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MP8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MP8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MP8
Splice isoforms : SwissVarQ96MP8
PhosPhoSitePlusQ96MP8
Domains : Interpro (EBI)BTB/POZ-like    BTB/POZ_fold    T1-type_BTB   
Domain families : Pfam (Sanger)BTB_2 (PF02214)   
Domain families : Pfam (NCBI)pfam02214   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCTD7
DMDM Disease mutations154881
Blocks (Seattle)KCTD7
SuperfamilyQ96MP8
Human Protein AtlasENSG00000243335
Peptide AtlasQ96MP8
HPRD13770
IPIIPI00924641   IPI00654697   
Protein Interaction databases
DIP (DOE-UCLA)Q96MP8
IntAct (EBI)Q96MP8
FunCoupENSG00000243335
BioGRIDKCTD7
STRING (EMBL)KCTD7
ZODIACKCTD7
Ontologies - Pathways
QuickGOQ96MP8
Ontology : AmiGOcytosol  plasma membrane  protein homooligomerization  
Ontology : EGO-EBIcytosol  plasma membrane  protein homooligomerization  
NDEx NetworkKCTD7
Atlas of Cancer Signalling NetworkKCTD7
Wikipedia pathwaysKCTD7
Orthology - Evolution
OrthoDB154881
GeneTree (enSembl)ENSG00000243335
Phylogenetic Trees/Animal Genes : TreeFamKCTD7
HOVERGENQ96MP8
HOGENOMQ96MP8
Homologs : HomoloGeneKCTD7
Homology/Alignments : Family Browser (UCSC)KCTD7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCTD7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCTD7
dbVarKCTD7
ClinVarKCTD7
1000_GenomesKCTD7 
Exome Variant ServerKCTD7
ExAC (Exome Aggregation Consortium)KCTD7 (select the gene name)
Genetic variants : HAPMAP154881
Genomic Variants (DGV)KCTD7 [DGVbeta]
DECIPHER (Syndromes)7:66093868-66108216  ENSG00000243335
CONAN: Copy Number AnalysisKCTD7 
Mutations
ICGC Data PortalKCTD7 
TCGA Data PortalKCTD7 
Broad Tumor PortalKCTD7
OASIS PortalKCTD7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCTD7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCTD7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch KCTD7
DgiDB (Drug Gene Interaction Database)KCTD7
DoCM (Curated mutations)KCTD7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCTD7 (select a term)
intoGenKCTD7
Cancer3DKCTD7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611725    611726   
Orphanet20066   
MedgenKCTD7
Genetic Testing Registry KCTD7
NextProtQ96MP8 [Medical]
TSGene154881
GENETestsKCTD7
Huge Navigator KCTD7 [HugePedia]
snp3D : Map Gene to Disease154881
BioCentury BCIQKCTD7
ClinGenKCTD7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD154881
Chemical/Pharm GKB GenePA134884591
Clinical trialKCTD7
Miscellaneous
canSAR (ICR)KCTD7 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCTD7
EVEXKCTD7
GoPubMedKCTD7
iHOPKCTD7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:35 CET 2017

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