Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCTD9 (potassium channel tetramerization domain containing 9)

Identity

Alias_namespotassium channel tetramerisation domain containing 9
Alias_symbol (synonym)FLJ20038
BTBD27
Other alias
HGNC (Hugo) KCTD9
LocusID (NCBI) 54793
Atlas_Id 64830
Location 8p21.2  [Link to chromosome band 8p21]
Location_base_pair Starts at 25427848 and ends at 25458468 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCTD9   22401
Cards
Entrez_Gene (NCBI)KCTD9  54793  potassium channel tetramerization domain containing 9
AliasesBTBD27
GeneCards (Weizmann)KCTD9
Ensembl hg19 (Hinxton)ENSG00000104756 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104756 [Gene_View]  chr8:25427848-25458468 [Contig_View]  KCTD9 [Vega]
ICGC DataPortalENSG00000104756
TCGA cBioPortalKCTD9
AceView (NCBI)KCTD9
Genatlas (Paris)KCTD9
WikiGenes54793
SOURCE (Princeton)KCTD9
Genetics Home Reference (NIH)KCTD9
Genomic and cartography
GoldenPath hg38 (UCSC)KCTD9  -     chr8:25427848-25458468 -  8p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCTD9  -     8p21.2   [Description]    (hg19-Feb_2009)
EnsemblKCTD9 - 8p21.2 [CytoView hg19]  KCTD9 - 8p21.2 [CytoView hg38]
Mapping of homologs : NCBIKCTD9 [Mapview hg19]  KCTD9 [Mapview hg38]
OMIM617265   
Gene and transcription
Genbank (Entrez)AF075015 AK000045 AK025995 AK298518 AL117436
RefSeq transcript (Entrez)NM_017634
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCTD9
Cluster EST : UnigeneHs.188763 [ NCBI ]
CGAP (NCI)Hs.188763
Alternative Splicing GalleryENSG00000104756
Gene ExpressionKCTD9 [ NCBI-GEO ]   KCTD9 [ EBI - ARRAY_EXPRESS ]   KCTD9 [ SEEK ]   KCTD9 [ MEM ]
Gene Expression Viewer (FireBrowse)KCTD9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54793
GTEX Portal (Tissue expression)KCTD9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L273   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L273  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L273
Splice isoforms : SwissVarQ7L273
PhosPhoSitePlusQ7L273
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    KHA (PS51490)   
Domains : Interpro (EBI)5peptide_repeat    BTB/POZ_dom    KHA_dom    L_dom-like    SKP1/BTB/POZ    T1-type_BTB   
Domain families : Pfam (Sanger)BTB_2 (PF02214)    KHA (PF11834)    Pentapeptide (PF00805)   
Domain families : Pfam (NCBI)pfam02214    pfam11834    pfam00805   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCTD9
DMDM Disease mutations54793
Blocks (Seattle)KCTD9
PDB (SRS)5BXH   
PDB (PDBSum)5BXH   
PDB (IMB)5BXH   
PDB (RSDB)5BXH   
Structural Biology KnowledgeBase5BXH   
SCOP (Structural Classification of Proteins)5BXH   
CATH (Classification of proteins structures)5BXH   
SuperfamilyQ7L273
Human Protein AtlasENSG00000104756
Peptide AtlasQ7L273
HPRD13772
IPIIPI00014825   IPI00909096   
Protein Interaction databases
DIP (DOE-UCLA)Q7L273
IntAct (EBI)Q7L273
FunCoupENSG00000104756
BioGRIDKCTD9
STRING (EMBL)KCTD9
ZODIACKCTD9
Ontologies - Pathways
QuickGOQ7L273
Ontology : AmiGOprotein binding  intracellular  protein ubiquitination  intracellular signal transduction  identical protein binding  protein self-association  protein homooligomerization  cullin family protein binding  
Ontology : EGO-EBIprotein binding  intracellular  protein ubiquitination  intracellular signal transduction  identical protein binding  protein self-association  protein homooligomerization  cullin family protein binding  
NDEx NetworkKCTD9
Atlas of Cancer Signalling NetworkKCTD9
Wikipedia pathwaysKCTD9
Orthology - Evolution
OrthoDB54793
GeneTree (enSembl)ENSG00000104756
Phylogenetic Trees/Animal Genes : TreeFamKCTD9
HOVERGENQ7L273
HOGENOMQ7L273
Homologs : HomoloGeneKCTD9
Homology/Alignments : Family Browser (UCSC)KCTD9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCTD9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCTD9
dbVarKCTD9
ClinVarKCTD9
1000_GenomesKCTD9 
Exome Variant ServerKCTD9
ExAC (Exome Aggregation Consortium)KCTD9 (select the gene name)
Genetic variants : HAPMAP54793
Genomic Variants (DGV)KCTD9 [DGVbeta]
DECIPHERKCTD9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCTD9 
Mutations
ICGC Data PortalKCTD9 
TCGA Data PortalKCTD9 
Broad Tumor PortalKCTD9
OASIS PortalKCTD9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCTD9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCTD9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCTD9
DgiDB (Drug Gene Interaction Database)KCTD9
DoCM (Curated mutations)KCTD9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCTD9 (select a term)
intoGenKCTD9
Cancer3DKCTD9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617265   
Orphanet
MedgenKCTD9
Genetic Testing Registry KCTD9
NextProtQ7L273 [Medical]
TSGene54793
GENETestsKCTD9
Target ValidationKCTD9
Huge Navigator KCTD9 [HugePedia]
snp3D : Map Gene to Disease54793
BioCentury BCIQKCTD9
ClinGenKCTD9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54793
Chemical/Pharm GKB GenePA134869993
Clinical trialKCTD9
Miscellaneous
canSAR (ICR)KCTD9 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCTD9
EVEXKCTD9
GoPubMedKCTD9
iHOPKCTD9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:54:18 CEST 2017

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