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KCTD9 (potassium channel tetramerization domain containing 9)

Identity

Alias_namespotassium channel tetramerisation domain containing 9
Alias_symbol (synonym)FLJ20038
BTBD27
Other alias
HGNC (Hugo) KCTD9
LocusID (NCBI) 54793
Atlas_Id 64830
Location 8p21.2  [Link to chromosome band 8p21]
Location_base_pair Starts at 25285364 and ends at 25315984 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCTD9   22401
Cards
Entrez_Gene (NCBI)KCTD9  54793  potassium channel tetramerization domain containing 9
AliasesBTBD27
GeneCards (Weizmann)KCTD9
Ensembl hg19 (Hinxton)ENSG00000104756 [Gene_View]  chr8:25285364-25315984 [Contig_View]  KCTD9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000104756 [Gene_View]  chr8:25285364-25315984 [Contig_View]  KCTD9 [Vega]
ICGC DataPortalENSG00000104756
TCGA cBioPortalKCTD9
AceView (NCBI)KCTD9
Genatlas (Paris)KCTD9
WikiGenes54793
SOURCE (Princeton)KCTD9
Genetics Home Reference (NIH)KCTD9
Genomic and cartography
GoldenPath hg19 (UCSC)KCTD9  -     chr8:25285364-25315984 -  8p21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KCTD9  -     8p21.2   [Description]    (hg38-Dec_2013)
EnsemblKCTD9 - 8p21.2 [CytoView hg19]  KCTD9 - 8p21.2 [CytoView hg38]
Mapping of homologs : NCBIKCTD9 [Mapview hg19]  KCTD9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF075015 AK000045 AK025995 AK298518 AL117436
RefSeq transcript (Entrez)NM_017634
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_167187 NW_004929337
Consensus coding sequences : CCDS (NCBI)KCTD9
Cluster EST : UnigeneHs.188763 [ NCBI ]
CGAP (NCI)Hs.188763
Alternative Splicing GalleryENSG00000104756
Gene ExpressionKCTD9 [ NCBI-GEO ]   KCTD9 [ EBI - ARRAY_EXPRESS ]   KCTD9 [ SEEK ]   KCTD9 [ MEM ]
Gene Expression Viewer (FireBrowse)KCTD9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54793
GTEX Portal (Tissue expression)KCTD9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L273   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L273  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L273
Splice isoforms : SwissVarQ7L273
PhosPhoSitePlusQ7L273
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    KHA (PS51490)   
Domains : Interpro (EBI)5peptide_repeat    BTB/POZ-like    BTB/POZ_fold    K_channel_plant    T1-type_BTB   
Domain families : Pfam (Sanger)BTB_2 (PF02214)    DUF3354 (PF11834)    Pentapeptide (PF00805)   
Domain families : Pfam (NCBI)pfam02214    pfam11834    pfam00805   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCTD9
DMDM Disease mutations54793
Blocks (Seattle)KCTD9
SuperfamilyQ7L273
Human Protein AtlasENSG00000104756
Peptide AtlasQ7L273
HPRD13772
IPIIPI00014825   IPI00909096   
Protein Interaction databases
DIP (DOE-UCLA)Q7L273
IntAct (EBI)Q7L273
FunCoupENSG00000104756
BioGRIDKCTD9
STRING (EMBL)KCTD9
ZODIACKCTD9
Ontologies - Pathways
QuickGOQ7L273
Ontology : AmiGOprotein binding  protein homooligomerization  
Ontology : EGO-EBIprotein binding  protein homooligomerization  
NDEx NetworkKCTD9
Atlas of Cancer Signalling NetworkKCTD9
Wikipedia pathwaysKCTD9
Orthology - Evolution
OrthoDB54793
GeneTree (enSembl)ENSG00000104756
Phylogenetic Trees/Animal Genes : TreeFamKCTD9
HOVERGENQ7L273
HOGENOMQ7L273
Homologs : HomoloGeneKCTD9
Homology/Alignments : Family Browser (UCSC)KCTD9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCTD9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCTD9
dbVarKCTD9
ClinVarKCTD9
1000_GenomesKCTD9 
Exome Variant ServerKCTD9
ExAC (Exome Aggregation Consortium)KCTD9 (select the gene name)
Genetic variants : HAPMAP54793
Genomic Variants (DGV)KCTD9 [DGVbeta]
DECIPHER (Syndromes)8:25285364-25315984  ENSG00000104756
CONAN: Copy Number AnalysisKCTD9 
Mutations
ICGC Data PortalKCTD9 
TCGA Data PortalKCTD9 
Broad Tumor PortalKCTD9
OASIS PortalKCTD9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCTD9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCTD9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCTD9
DgiDB (Drug Gene Interaction Database)KCTD9
DoCM (Curated mutations)KCTD9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCTD9 (select a term)
intoGenKCTD9
Cancer3DKCTD9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKCTD9
Genetic Testing Registry KCTD9
NextProtQ7L273 [Medical]
TSGene54793
GENETestsKCTD9
Huge Navigator KCTD9 [HugePedia]
snp3D : Map Gene to Disease54793
BioCentury BCIQKCTD9
ClinGenKCTD9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54793
Chemical/Pharm GKB GenePA134869993
Clinical trialKCTD9
Miscellaneous
canSAR (ICR)KCTD9 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCTD9
EVEXKCTD9
GoPubMedKCTD9
iHOPKCTD9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:35 CET 2017

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