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KDELR3 (KDEL endoplasmic reticulum protein retention receptor 3)

Identity

Alias_namesKDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3
Other aliasERD2L3
HGNC (Hugo) KDELR3
LocusID (NCBI) 11015
Atlas_Id 64834
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 38468062 and ends at 38483447 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CSNK1E (22q13.1) / KDELR3 (22q13.1)DDX17 (22q13.1) / KDELR3 (22q13.1)KDELR3 (22q13.1) / KDELR3 (22q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KDELR3   6306
Cards
Entrez_Gene (NCBI)KDELR3  11015  KDEL endoplasmic reticulum protein retention receptor 3
AliasesERD2L3
GeneCards (Weizmann)KDELR3
Ensembl hg19 (Hinxton)ENSG00000100196 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100196 [Gene_View]  chr22:38468062-38483447 [Contig_View]  KDELR3 [Vega]
ICGC DataPortalENSG00000100196
TCGA cBioPortalKDELR3
AceView (NCBI)KDELR3
Genatlas (Paris)KDELR3
WikiGenes11015
SOURCE (Princeton)KDELR3
Genetics Home Reference (NIH)KDELR3
Genomic and cartography
GoldenPath hg38 (UCSC)KDELR3  -     chr22:38468062-38483447 +  22q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KDELR3  -     22q13.1   [Description]    (hg19-Feb_2009)
EnsemblKDELR3 - 22q13.1 [CytoView hg19]  KDELR3 - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBIKDELR3 [Mapview hg19]  KDELR3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI753246 AK129888 AK222930 AK223238 AK292102
RefSeq transcript (Entrez)NM_006855 NM_016657
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KDELR3
Cluster EST : UnigeneHs.745072 [ NCBI ]
CGAP (NCI)Hs.745072
Alternative Splicing GalleryENSG00000100196
Gene ExpressionKDELR3 [ NCBI-GEO ]   KDELR3 [ EBI - ARRAY_EXPRESS ]   KDELR3 [ SEEK ]   KDELR3 [ MEM ]
Gene Expression Viewer (FireBrowse)KDELR3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11015
GTEX Portal (Tissue expression)KDELR3
Human Protein AtlasENSG00000100196-KDELR3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43731   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43731  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43731
Splice isoforms : SwissVarO43731
PhosPhoSitePlusO43731
Domaine pattern : Prosite (Expaxy)ER_LUMEN_RECEPTOR_1 (PS00951)    ER_LUMEN_RECEPTOR_2 (PS00952)   
Domains : Interpro (EBI)ER_ret_rcpt   
Domain families : Pfam (Sanger)ER_lumen_recept (PF00810)   
Domain families : Pfam (NCBI)pfam00810   
Conserved Domain (NCBI)KDELR3
DMDM Disease mutations11015
Blocks (Seattle)KDELR3
SuperfamilyO43731
Human Protein Atlas [tissue]ENSG00000100196-KDELR3 [tissue]
Peptide AtlasO43731
HPRD17177
IPIIPI00013872   IPI00376991   
Protein Interaction databases
DIP (DOE-UCLA)O43731
IntAct (EBI)O43731
FunCoupENSG00000100196
BioGRIDKDELR3
STRING (EMBL)KDELR3
ZODIACKDELR3
Ontologies - Pathways
QuickGOO43731
Ontology : AmiGOGolgi membrane  endoplasmic reticulum  endoplasmic reticulum membrane  protein retention in ER lumen  retrograde vesicle-mediated transport, Golgi to ER  protein transport  integral component of membrane  transport vesicle  IRE1-mediated unfolded protein response  ER retention sequence binding  
Ontology : EGO-EBIGolgi membrane  endoplasmic reticulum  endoplasmic reticulum membrane  protein retention in ER lumen  retrograde vesicle-mediated transport, Golgi to ER  protein transport  integral component of membrane  transport vesicle  IRE1-mediated unfolded protein response  ER retention sequence binding  
Pathways : KEGGVibrio cholerae infection   
NDEx NetworkKDELR3
Atlas of Cancer Signalling NetworkKDELR3
Wikipedia pathwaysKDELR3
Orthology - Evolution
OrthoDB11015
GeneTree (enSembl)ENSG00000100196
Phylogenetic Trees/Animal Genes : TreeFamKDELR3
HOVERGENO43731
HOGENOMO43731
Homologs : HomoloGeneKDELR3
Homology/Alignments : Family Browser (UCSC)KDELR3
Gene fusions - Rearrangements
Tumor Fusion PortalKDELR3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKDELR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KDELR3
dbVarKDELR3
ClinVarKDELR3
1000_GenomesKDELR3 
Exome Variant ServerKDELR3
ExAC (Exome Aggregation Consortium)ENSG00000100196
GNOMAD BrowserENSG00000100196
Genetic variants : HAPMAP11015
Genomic Variants (DGV)KDELR3 [DGVbeta]
DECIPHERKDELR3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKDELR3 
Mutations
ICGC Data PortalKDELR3 
TCGA Data PortalKDELR3 
Broad Tumor PortalKDELR3
OASIS PortalKDELR3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKDELR3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKDELR3
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch KDELR3
DgiDB (Drug Gene Interaction Database)KDELR3
DoCM (Curated mutations)KDELR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KDELR3 (select a term)
intoGenKDELR3
Cancer3DKDELR3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETKDELR3
MedgenKDELR3
Genetic Testing Registry KDELR3
NextProtO43731 [Medical]
TSGene11015
GENETestsKDELR3
Target ValidationKDELR3
Huge Navigator KDELR3 [HugePedia]
snp3D : Map Gene to Disease11015
BioCentury BCIQKDELR3
ClinGenKDELR3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11015
Chemical/Pharm GKB GenePA30085
Clinical trialKDELR3
Miscellaneous
canSAR (ICR)KDELR3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKDELR3
EVEXKDELR3
GoPubMedKDELR3
iHOPKDELR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:43:47 CET 2017

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