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KDM2A (lysine demethylase 2A)

Identity

Alias (NCBI)CXXC8
FBL11
FBL7
FBXL11
JHDM1A
LILINA
HGNC (Hugo) KDM2A
HGNC Alias symbKIAA1004
FBL11
LILINA
DKFZP434M1735
FBL7
FLJ00115
CXXC8
JHDM1A
HGNC Alias nameF-box protein FBL11
 jumonji C domain-containing histone demethylase 1A
HGNC Previous nameFBXL11
HGNC Previous nameF-box and leucine-rich repeat protein 11
 lysine (K)-specific demethylase 2A
LocusID (NCBI) 22992
Atlas_Id 40540
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 67119263 and ends at 67258079 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AAAS (12q13.13)::KDM2A (11q13.2)IGSF3 (1p13.1)::KDM2A (11q13.2)KDM2A (11q13.2)::C11orf80 (11q13.2)
KDM2A (11q13.2)::DDR2 (1q23.3)KDM2A (11q13.2)::FBXO3 (11p13)KDM2A (11q13.2)::GLB1L2 (11q25)
KDM2A (11q13.2)::GRIP1 (12q14.3)KDM2A (11q13.2)::KDM2A (11q13.2)KDM2A (11q13.2)::MAP3K3 (17q23.3)
KDM2A (11q13.2)::PACS1 (11q13.1)KDM2A (11q13.2)::PPP6R3 (11q13.2)KDM2A (11q13.2)::RHOD (11q13.2)
KDM2A (11q13.2)::SLC6A19 (5p15.33)KDM2A (11q13.2)::SYT12 (11q13.2)KDM2A (11q13.2)::TMEM71 (8q24.22)
PACS1 (11q13.1)::KDM2A (11q13.2)PCF11 (11q14.1)::KDM2A (11q13.2)PPP2R5B (11q13.1)::KDM2A (11q13.2)
RPS6KB2 (11q13.2)::KDM2A (11q13.2)SLC44A1 (9q31.1)::KDM2A (11q13.2)IGSF3 1p13.1::KDM2A 11q13.2
KDM2A 11q13.2::C11orf80 11q13.2KDM2A 11q13.2::DDR2 1q23.3KDM2A 11q13.2::FBXO3 11p13
KDM2A 11q13.2::GRIP1 12q14.3KDM2A 11q13.2::MAP3K3 17q23.3KDM2A 11q13.2::PACS1 11q13.1
KDM2A 11q13.2::PPP6R3 11q13.2KDM2A 11q13.2::RHOD 11q13.2KDM2A 11q13.2::SYT12 11q13.2
PCF11 11q14.1::KDM2A 11q13.2PPP2R5B 11q13.1::KDM2A 11q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KDM2A   13606
Cards
Entrez_Gene (NCBI)KDM2A    lysine demethylase 2A
AliasesCXXC8; FBL11; FBL7; FBXL11; 
JHDM1A; LILINA
GeneCards (Weizmann)KDM2A
Ensembl hg19 (Hinxton)ENSG00000173120 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173120 [Gene_View]  ENSG00000173120 [Sequence]  chr11:67119263-67258079 [Contig_View]  KDM2A [Vega]
ICGC DataPortalENSG00000173120
TCGA cBioPortalKDM2A
AceView (NCBI)KDM2A
Genatlas (Paris)KDM2A
SOURCE (Princeton)KDM2A
Genetics Home Reference (NIH)KDM2A
Genomic and cartography
GoldenPath hg38 (UCSC)KDM2A  -     chr11:67119263-67258079 +  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KDM2A  -     11q13.2   [Description]    (hg19-Feb_2009)
GoldenPathKDM2A - 11q13.2 [CytoView hg19]  KDM2A - 11q13.2 [CytoView hg38]
ImmunoBaseENSG00000173120
Genome Data Viewer NCBIKDM2A [Mapview hg19]  
OMIM605657   
Gene and transcription
Genbank (Entrez)AB023221 AB490246 AF179221 AI185920 AK022684
RefSeq transcript (Entrez)NM_001256405 NM_012308
Consensus coding sequences : CCDS (NCBI)KDM2A
Gene ExpressionKDM2A [ NCBI-GEO ]   KDM2A [ EBI - ARRAY_EXPRESS ]   KDM2A [ SEEK ]   KDM2A [ MEM ]
Gene Expression Viewer (FireBrowse)KDM2A [ Firebrowse - Broad ]
GenevisibleExpression of KDM2A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22992
GTEX Portal (Tissue expression)KDM2A
Human Protein AtlasENSG00000173120-KDM2A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KDM2A
Human Protein Atlas [tissue]ENSG00000173120-KDM2A [tissue]
HPRD05741
Protein Interaction databases
BioGRIDKDM2A
STRING (EMBL)KDM2A
ZODIACKDM2A
Ontologies - Pathways
Litterature
PubMed87 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXKDM2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:16:37 CET 2022
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