Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KDM4A-AS1 (KDM4A antisense RNA 1)

Identity

Alias_namesKDM4A antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) KDM4A-AS1
LocusID (NCBI) 100132774
Atlas_Id 64836
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 43699738 and ends at 43707341 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KDM4A-AS1   40528
Cards
Entrez_Gene (NCBI)KDM4A-AS1  100132774  KDM4A antisense RNA 1
Aliases
GeneCards (Weizmann)KDM4A-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:43699738-43707341 [Contig_View]  KDM4A-AS1 [Vega]
TCGA cBioPortalKDM4A-AS1
AceView (NCBI)KDM4A-AS1
Genatlas (Paris)KDM4A-AS1
WikiGenes100132774
SOURCE (Princeton)KDM4A-AS1
Genetics Home Reference (NIH)KDM4A-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)KDM4A-AS1  -     chr1:43699738-43707341 -  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KDM4A-AS1  -     1p34.2   [Description]    (hg19-Feb_2009)
EnsemblKDM4A-AS1 - 1p34.2 [CytoView hg19]  KDM4A-AS1 - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBIKDM4A-AS1 [Mapview hg19]  KDM4A-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC073819 BC094867
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KDM4A-AS1
Cluster EST : UnigeneHs.655569 [ NCBI ]
CGAP (NCI)Hs.655569
Gene ExpressionKDM4A-AS1 [ NCBI-GEO ]   KDM4A-AS1 [ EBI - ARRAY_EXPRESS ]   KDM4A-AS1 [ SEEK ]   KDM4A-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)KDM4A-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100132774
GTEX Portal (Tissue expression)KDM4A-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KDM4A-AS1
DMDM Disease mutations100132774
Blocks (Seattle)KDM4A-AS1
Protein Interaction databases
BioGRIDKDM4A-AS1
STRING (EMBL)KDM4A-AS1
ZODIACKDM4A-AS1
Ontologies - Pathways
Huge Navigator KDM4A-AS1 [HugePedia]
snp3D : Map Gene to Disease100132774
BioCentury BCIQKDM4A-AS1
ClinGenKDM4A-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132774
Clinical trialKDM4A-AS1
Miscellaneous
canSAR (ICR)KDM4A-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKDM4A-AS1
EVEXKDM4A-AS1
GoPubMedKDM4A-AS1
iHOPKDM4A-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:52:17 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.