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KHNYN (KH and NYN domain containing)

Identity

Alias_namesKIAA0323
KIAA0323
Other alias
HGNC (Hugo) KHNYN
LocusID (NCBI) 23351
Atlas_Id 64845
Location 14q12  [Link to chromosome band 14q12]
Location_base_pair Starts at 24429286 and ends at 24441341 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KHNYN (14q12) / SEC13 (3p25.3)KHNYN (14q12) / SFTPB (2p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KHNYN   20166
Cards
Entrez_Gene (NCBI)KHNYN  23351  KH and NYN domain containing
AliasesKIAA0323
GeneCards (Weizmann)KHNYN
Ensembl hg19 (Hinxton)ENSG00000100441 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100441 [Gene_View]  chr14:24429286-24441341 [Contig_View]  KHNYN [Vega]
ICGC DataPortalENSG00000100441
TCGA cBioPortalKHNYN
AceView (NCBI)KHNYN
Genatlas (Paris)KHNYN
WikiGenes23351
SOURCE (Princeton)KHNYN
Genetics Home Reference (NIH)KHNYN
Genomic and cartography
GoldenPath hg38 (UCSC)KHNYN  -     chr14:24429286-24441341 +  14q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KHNYN  -     14q12   [Description]    (hg19-Feb_2009)
EnsemblKHNYN - 14q12 [CytoView hg19]  KHNYN - 14q12 [CytoView hg38]
Mapping of homologs : NCBIKHNYN [Mapview hg19]  KHNYN [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA493312 AB002321 AK291680 BC015780 BC042554
RefSeq transcript (Entrez)NM_001290256 NM_001290257 NM_015299
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KHNYN
Cluster EST : UnigeneHs.713590 [ NCBI ]
CGAP (NCI)Hs.713590
Alternative Splicing GalleryENSG00000100441
Gene ExpressionKHNYN [ NCBI-GEO ]   KHNYN [ EBI - ARRAY_EXPRESS ]   KHNYN [ SEEK ]   KHNYN [ MEM ]
Gene Expression Viewer (FireBrowse)KHNYN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23351
GTEX Portal (Tissue expression)KHNYN
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15037   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15037  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15037
Splice isoforms : SwissVarO15037
PhosPhoSitePlusO15037
Domains : Interpro (EBI)KH_dom_type_1    RNase_Zc3h12_NYN   
Domain families : Pfam (Sanger)RNase_Zc3h12a (PF11977)   
Domain families : Pfam (NCBI)pfam11977   
Conserved Domain (NCBI)KHNYN
DMDM Disease mutations23351
Blocks (Seattle)KHNYN
PDB (SRS)2N5M    2N7K   
PDB (PDBSum)2N5M    2N7K   
PDB (IMB)2N5M    2N7K   
PDB (RSDB)2N5M    2N7K   
Structural Biology KnowledgeBase2N5M    2N7K   
SCOP (Structural Classification of Proteins)2N5M    2N7K   
CATH (Classification of proteins structures)2N5M    2N7K   
SuperfamilyO15037
Human Protein AtlasENSG00000100441
Peptide AtlasO15037
HPRD11076
IPIIPI00829596   IPI01026368   IPI01026344   
Protein Interaction databases
DIP (DOE-UCLA)O15037
IntAct (EBI)O15037
FunCoupENSG00000100441
BioGRIDKHNYN
STRING (EMBL)KHNYN
ZODIACKHNYN
Ontologies - Pathways
QuickGOO15037
Ontology : AmiGOmolecular_function  RNA binding  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  RNA binding  cellular_component  biological_process  
NDEx NetworkKHNYN
Atlas of Cancer Signalling NetworkKHNYN
Wikipedia pathwaysKHNYN
Orthology - Evolution
OrthoDB23351
GeneTree (enSembl)ENSG00000100441
Phylogenetic Trees/Animal Genes : TreeFamKHNYN
HOVERGENO15037
HOGENOMO15037
Homologs : HomoloGeneKHNYN
Homology/Alignments : Family Browser (UCSC)KHNYN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKHNYN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KHNYN
dbVarKHNYN
ClinVarKHNYN
1000_GenomesKHNYN 
Exome Variant ServerKHNYN
ExAC (Exome Aggregation Consortium)KHNYN (select the gene name)
Genetic variants : HAPMAP23351
Genomic Variants (DGV)KHNYN [DGVbeta]
DECIPHERKHNYN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKHNYN 
Mutations
ICGC Data PortalKHNYN 
TCGA Data PortalKHNYN 
Broad Tumor PortalKHNYN
OASIS PortalKHNYN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKHNYN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKHNYN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KHNYN
DgiDB (Drug Gene Interaction Database)KHNYN
DoCM (Curated mutations)KHNYN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KHNYN (select a term)
intoGenKHNYN
Cancer3DKHNYN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKHNYN
Genetic Testing Registry KHNYN
NextProtO15037 [Medical]
TSGene23351
GENETestsKHNYN
Huge Navigator KHNYN [HugePedia]
snp3D : Map Gene to Disease23351
BioCentury BCIQKHNYN
ClinGenKHNYN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23351
Chemical/Pharm GKB GenePA165479143
Clinical trialKHNYN
Miscellaneous
canSAR (ICR)KHNYN (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKHNYN
EVEXKHNYN
GoPubMedKHNYN
iHOPKHNYN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:17:50 CEST 2017

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