Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KIAA0020 (KIAA0020)

Identity

Other aliasHA-8
HLA-HA8
PEN
PUF-A
PUF6
XTP5
HGNC (Hugo) KIAA0020
LocusID (NCBI) 9933
Atlas_Id 64846
Location 9p24.2  [Link to chromosome band 9p24]
Location_base_pair Starts at 2804155 and ends at 2844130 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KIAA0020   29676
Cards
Entrez_Gene (NCBI)KIAA0020  9933  KIAA0020
AliasesHA-8; HLA-HA8; PEN; PUF-A; 
PUF6; XTP5
GeneCards (Weizmann)KIAA0020
Ensembl hg19 (Hinxton)ENSG00000080608 [Gene_View]  chr9:2804155-2844130 [Contig_View]  KIAA0020 [Vega]
Ensembl hg38 (Hinxton)ENSG00000080608 [Gene_View]  chr9:2804155-2844130 [Contig_View]  KIAA0020 [Vega]
ICGC DataPortalENSG00000080608
TCGA cBioPortalKIAA0020
AceView (NCBI)KIAA0020
Genatlas (Paris)KIAA0020
WikiGenes9933
SOURCE (Princeton)KIAA0020
Genetics Home Reference (NIH)KIAA0020
Genomic and cartography
GoldenPath hg19 (UCSC)KIAA0020  -     chr9:2804155-2844130 -  9p24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KIAA0020  -     9p24.2   [Description]    (hg38-Dec_2013)
EnsemblKIAA0020 - 9p24.2 [CytoView hg19]  KIAA0020 - 9p24.2 [CytoView hg38]
Mapping of homologs : NCBIKIAA0020 [Mapview hg19]  KIAA0020 [Mapview hg38]
OMIM609960   
Gene and transcription
Genbank (Entrez)AF490254 AK225953 AK292169 AK315531 AL832239
RefSeq transcript (Entrez)NM_001031691 NM_014878
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)KIAA0020
Cluster EST : UnigeneHs.493309 [ NCBI ]
CGAP (NCI)Hs.493309
Alternative Splicing GalleryENSG00000080608
Gene ExpressionKIAA0020 [ NCBI-GEO ]   KIAA0020 [ EBI - ARRAY_EXPRESS ]   KIAA0020 [ SEEK ]   KIAA0020 [ MEM ]
Gene Expression Viewer (FireBrowse)KIAA0020 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9933
GTEX Portal (Tissue expression)KIAA0020
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15397   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15397  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15397
Splice isoforms : SwissVarQ15397
PhosPhoSitePlusQ15397
Domaine pattern : Prosite (Expaxy)PUM (PS50302)    PUM_HD (PS50303)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    CPL    Pumilio_RNA-bd_rpt   
Domain families : Pfam (Sanger)CPL (PF08144)   
Domain families : Pfam (NCBI)pfam08144   
Domain families : Smart (EMBL)Pumilio (SM00025)  
Conserved Domain (NCBI)KIAA0020
DMDM Disease mutations9933
Blocks (Seattle)KIAA0020
PDB (SRS)4WZR    4WZW   
PDB (PDBSum)4WZR    4WZW   
PDB (IMB)4WZR    4WZW   
PDB (RSDB)4WZR    4WZW   
Structural Biology KnowledgeBase4WZR    4WZW   
SCOP (Structural Classification of Proteins)4WZR    4WZW   
CATH (Classification of proteins structures)4WZR    4WZW   
SuperfamilyQ15397
Human Protein AtlasENSG00000080608
Peptide AtlasQ15397
HPRD08822
IPIIPI00791325   
Protein Interaction databases
DIP (DOE-UCLA)Q15397
IntAct (EBI)Q15397
FunCoupENSG00000080608
BioGRIDKIAA0020
STRING (EMBL)KIAA0020
ZODIACKIAA0020
Ontologies - Pathways
QuickGOQ15397
Ontology : AmiGODNA binding  mRNA binding  nucleolus  endoplasmic reticulum  regulation of translation  poly(A) RNA binding  
Ontology : EGO-EBIDNA binding  mRNA binding  nucleolus  endoplasmic reticulum  regulation of translation  poly(A) RNA binding  
NDEx NetworkKIAA0020
Atlas of Cancer Signalling NetworkKIAA0020
Wikipedia pathwaysKIAA0020
Orthology - Evolution
OrthoDB9933
GeneTree (enSembl)ENSG00000080608
Phylogenetic Trees/Animal Genes : TreeFamKIAA0020
HOVERGENQ15397
HOGENOMQ15397
Homologs : HomoloGeneKIAA0020
Homology/Alignments : Family Browser (UCSC)KIAA0020
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKIAA0020 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIAA0020
dbVarKIAA0020
ClinVarKIAA0020
1000_GenomesKIAA0020 
Exome Variant ServerKIAA0020
ExAC (Exome Aggregation Consortium)KIAA0020 (select the gene name)
Genetic variants : HAPMAP9933
Genomic Variants (DGV)KIAA0020 [DGVbeta]
DECIPHER (Syndromes)9:2804155-2844130  ENSG00000080608
CONAN: Copy Number AnalysisKIAA0020 
Mutations
ICGC Data PortalKIAA0020 
TCGA Data PortalKIAA0020 
Broad Tumor PortalKIAA0020
OASIS PortalKIAA0020 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKIAA0020  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKIAA0020
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KIAA0020
DgiDB (Drug Gene Interaction Database)KIAA0020
DoCM (Curated mutations)KIAA0020 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KIAA0020 (select a term)
intoGenKIAA0020
Cancer3DKIAA0020(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609960   
Orphanet
MedgenKIAA0020
Genetic Testing Registry KIAA0020
NextProtQ15397 [Medical]
TSGene9933
GENETestsKIAA0020
Huge Navigator KIAA0020 [HugePedia]
snp3D : Map Gene to Disease9933
BioCentury BCIQKIAA0020
ClinGenKIAA0020
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9933
Chemical/Pharm GKB GenePA134895115
Clinical trialKIAA0020
Miscellaneous
canSAR (ICR)KIAA0020 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKIAA0020
EVEXKIAA0020
GoPubMedKIAA0020
iHOPKIAA0020
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:38 CET 2017

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