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KIAA0040 (KIAA0040)

Identity

Other alias-
HGNC (Hugo) KIAA0040
LocusID (NCBI) 9674
Atlas_Id 64847
Location 1q25.1  [Link to chromosome band 1q25]
Location_base_pair Starts at 175156987 and ends at 175193093 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HTRA1 (10q26.13) / KIAA0040 (1q25.1)KIAA0040 (1q25.1) / RAC1 (7p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KIAA0040   28950
Cards
Entrez_Gene (NCBI)KIAA0040  9674  KIAA0040
Aliases
GeneCards (Weizmann)KIAA0040
Ensembl hg19 (Hinxton)ENSG00000235750 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235750 [Gene_View]  chr1:175156987-175193093 [Contig_View]  KIAA0040 [Vega]
ICGC DataPortalENSG00000235750
TCGA cBioPortalKIAA0040
AceView (NCBI)KIAA0040
Genatlas (Paris)KIAA0040
WikiGenes9674
SOURCE (Princeton)KIAA0040
Genetics Home Reference (NIH)KIAA0040
Genomic and cartography
GoldenPath hg38 (UCSC)KIAA0040  -     chr1:175156987-175193093 -  1q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KIAA0040  -     1q25.1   [Description]    (hg19-Feb_2009)
EnsemblKIAA0040 - 1q25.1 [CytoView hg19]  KIAA0040 - 1q25.1 [CytoView hg38]
Mapping of homologs : NCBIKIAA0040 [Mapview hg19]  KIAA0040 [Mapview hg38]
OMIM616696   
Gene and transcription
Genbank (Entrez)AK292691 AL049799 AL049800 BC020789 BC032361
RefSeq transcript (Entrez)NM_001162893 NM_001162894 NM_001162895 NM_001319230 NM_001319231 NM_014656
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KIAA0040
Cluster EST : UnigeneHs.518138 [ NCBI ]
CGAP (NCI)Hs.518138
Alternative Splicing GalleryENSG00000235750
Gene ExpressionKIAA0040 [ NCBI-GEO ]   KIAA0040 [ EBI - ARRAY_EXPRESS ]   KIAA0040 [ SEEK ]   KIAA0040 [ MEM ]
Gene Expression Viewer (FireBrowse)KIAA0040 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9674
GTEX Portal (Tissue expression)KIAA0040
Human Protein AtlasENSG00000235750-KIAA0040 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15053   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15053  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15053
Splice isoforms : SwissVarQ15053
PhosPhoSitePlusQ15053
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KIAA0040
DMDM Disease mutations9674
Blocks (Seattle)KIAA0040
SuperfamilyQ15053
Human Protein Atlas [tissue]ENSG00000235750-KIAA0040 [tissue]
Peptide AtlasQ15053
HPRD13776
IPIIPI00014259   IPI00936462   
Protein Interaction databases
DIP (DOE-UCLA)Q15053
IntAct (EBI)Q15053
FunCoupENSG00000235750
BioGRIDKIAA0040
STRING (EMBL)KIAA0040
ZODIACKIAA0040
Ontologies - Pathways
QuickGOQ15053
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkKIAA0040
Atlas of Cancer Signalling NetworkKIAA0040
Wikipedia pathwaysKIAA0040
Orthology - Evolution
OrthoDB9674
GeneTree (enSembl)ENSG00000235750
Phylogenetic Trees/Animal Genes : TreeFamKIAA0040
HOVERGENQ15053
HOGENOMQ15053
Homologs : HomoloGeneKIAA0040
Homology/Alignments : Family Browser (UCSC)KIAA0040
Gene fusions - Rearrangements
Tumor Fusion PortalKIAA0040
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKIAA0040 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIAA0040
dbVarKIAA0040
ClinVarKIAA0040
1000_GenomesKIAA0040 
Exome Variant ServerKIAA0040
ExAC (Exome Aggregation Consortium)ENSG00000235750
GNOMAD BrowserENSG00000235750
Genetic variants : HAPMAP9674
Genomic Variants (DGV)KIAA0040 [DGVbeta]
DECIPHERKIAA0040 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKIAA0040 
Mutations
ICGC Data PortalKIAA0040 
TCGA Data PortalKIAA0040 
Broad Tumor PortalKIAA0040
OASIS PortalKIAA0040 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKIAA0040  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKIAA0040
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KIAA0040
DgiDB (Drug Gene Interaction Database)KIAA0040
DoCM (Curated mutations)KIAA0040 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KIAA0040 (select a term)
intoGenKIAA0040
Cancer3DKIAA0040(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616696   
Orphanet
DisGeNETKIAA0040
MedgenKIAA0040
Genetic Testing Registry KIAA0040
NextProtQ15053 [Medical]
TSGene9674
GENETestsKIAA0040
Target ValidationKIAA0040
Huge Navigator KIAA0040 [HugePedia]
snp3D : Map Gene to Disease9674
BioCentury BCIQKIAA0040
ClinGenKIAA0040
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9674
Chemical/Pharm GKB GenePA128394552
Clinical trialKIAA0040
Miscellaneous
canSAR (ICR)KIAA0040 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKIAA0040
EVEXKIAA0040
GoPubMedKIAA0040
iHOPKIAA0040
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:00:35 CET 2017

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