Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KIAA0196 (KIAA0196)

Identity

Other namesSPG8
HGNC (Hugo) KIAA0196
LocusID (NCBI) 9897
Location 8q24.13
Location_base_pair Starts at 126036503 and ends at 126104061 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KIAA0196   28984
Cards
Entrez_Gene (NCBI)KIAA0196  9897  KIAA0196
GeneCards (Weizmann)KIAA0196
Ensembl (Hinxton)ENSG00000164961 [Gene_View]  chr8:126036503-126104061 [Contig_View]  KIAA0196 [Vega]
ICGC DataPortalENSG00000164961
cBioPortalKIAA0196
AceView (NCBI)KIAA0196
Genatlas (Paris)KIAA0196
WikiGenes9897
SOURCE (Princeton)NM_014846
Genomic and cartography
GoldenPath (UCSC)KIAA0196  -  8q24.13   chr8:126036503-126104061 -  8q24.13   [Description]    (hg19-Feb_2009)
EnsemblKIAA0196 - 8q24.13 [CytoView]
Mapping of homologs : NCBIKIAA0196 [Mapview]
OMIM603563   610657   
Gene and transcription
Genbank (Entrez)AI266595 AK223628 AK291032 AK296970 BC026951
RefSeq transcript (Entrez)NM_014846
RefSeq genomic (Entrez)AC_000140 NC_000008 NC_018919 NG_012636 NT_008046 NW_001839136 NW_004929340
Consensus coding sequences : CCDS (NCBI)KIAA0196
Cluster EST : UnigeneHs.270043 [ NCBI ]
CGAP (NCI)Hs.270043
Alternative Splicing : Fast-db (Paris)GSHG0029847
Alternative Splicing GalleryENSG00000164961
Gene ExpressionKIAA0196 [ NCBI-GEO ]     KIAA0196 [ SEEK ]   KIAA0196 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12768 (Uniprot)
NextProtQ12768  [Medical]
With graphics : InterProQ12768
Splice isoforms : SwissVarQ12768 (Swissvar)
Domains : Interpro (EBI)WASH_strumpellin [organisation]  
Related proteins : CluSTrQ12768
Domain families : Pfam (Sanger)Strumpellin (PF10266)   
Domain families : Pfam (NCBI)pfam10266   
DMDM Disease mutations9897
Blocks (Seattle)Q12768
Human Protein AtlasENSG00000164961 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ12768
HPRD13786
IPIIPI00029175   IPI00976079   IPI00976414   IPI00977066   
Protein Interaction databases
DIP (DOE-UCLA)Q12768
IntAct (EBI)Q12768
FunCoupENSG00000164961
BioGRIDKIAA0196
InParanoidQ12768
Interologous Interaction database Q12768
IntegromeDBKIAA0196
STRING (EMBL)KIAA0196
Ontologies - Pathways
Ontology : AmiGOendosome  cell death  endosomal transport  WASH complex  
Ontology : EGO-EBIendosome  cell death  endosomal transport  WASH complex  
Protein Interaction DatabaseKIAA0196
Wikipedia pathwaysKIAA0196
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)KIAA0196
snp3D : Map Gene to Disease9897
SNP (GeneSNP Utah)KIAA0196
SNP : HGBaseKIAA0196
Genetic variants : HAPMAPKIAA0196
Exome VariantKIAA0196
1000_GenomesKIAA0196 
ICGC programENSG00000164961 
Somatic Mutations in Cancer : COSMICKIAA0196 
CONAN: Copy Number AnalysisKIAA0196 
Mutations and Diseases : HGMDKIAA0196
Genomic VariantsKIAA0196  KIAA0196 [DGVbeta]
dbVarKIAA0196
ClinVarKIAA0196
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM603563    610657   
MedgenKIAA0196
GENETestsKIAA0196
Disease Genetic AssociationKIAA0196
Huge Navigator KIAA0196 [HugePedia]  KIAA0196 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneKIAA0196
Homology/Alignments : Family Browser (UCSC)KIAA0196
Phylogenetic Trees/Animal Genes : TreeFamKIAA0196
Chemical/Protein Interactions : CTD9897
Chemical/Pharm GKB GenePA142671624
Clinical trialKIAA0196
Cancer Resource (Charite)ENSG00000164961
Other databases
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
CoreMineKIAA0196
iHOPKIAA0196
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 17:01:53 CEST 2014

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