Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

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KIAA0196 (KIAA0196)


Other namesRTSC
HGNC (Hugo) KIAA0196
LocusID (NCBI) 9897
Location 8q24.13
Location_base_pair Starts at 126036503 and ends at 126104061 bp from pter ( according to hg19-Feb_2009)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)KIAA0196   28984
Entrez_Gene (NCBI)KIAA0196  9897  KIAA0196
GeneCards (Weizmann)KIAA0196
Ensembl hg19 (Hinxton)ENSG00000164961 [Gene_View]  chr8:126036503-126104061 [Contig_View]  KIAA0196 [Vega]
Ensembl hg38 (Hinxton)ENSG00000164961 [Gene_View]  chr8:126036503-126104061 [Contig_View]  KIAA0196 [Vega]
ICGC DataPortalENSG00000164961
AceView (NCBI)KIAA0196
Genatlas (Paris)KIAA0196
SOURCE (Princeton)KIAA0196
Genomic and cartography
GoldenPath hg19 (UCSC)KIAA0196  -     chr8:126036503-126104061 -  8q24.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KIAA0196  -     8q24.13   [Description]    (hg38-Dec_2013)
EnsemblKIAA0196 - 8q24.13 [CytoView hg19]  KIAA0196 - 8q24.13 [CytoView hg38]
Mapping of homologs : NCBIKIAA0196 [Mapview hg19]  KIAA0196 [Mapview hg38]
OMIM220210   603563   610657   
Gene and transcription
Genbank (Entrez)AI266595 AK223628 AK291032 AK296970 BC026951
RefSeq transcript (Entrez)NM_014846
RefSeq genomic (Entrez)AC_000140 NC_000008 NC_018919 NG_012636 NT_008046 NW_001839136 NW_004929340
Consensus coding sequences : CCDS (NCBI)KIAA0196
Cluster EST : UnigeneHs.270043 [ NCBI ]
CGAP (NCI)Hs.270043
Alternative Splicing : Fast-db (Paris)GSHG0029847
Alternative Splicing GalleryENSG00000164961
Gene ExpressionKIAA0196 [ NCBI-GEO ]     KIAA0196 [ SEEK ]   KIAA0196 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12768 (Uniprot)
NextProtQ12768  [Medical]
With graphics : InterProQ12768
Splice isoforms : SwissVarQ12768 (Swissvar)
Domains : Interpro (EBI)WASH_strumpellin   
Related proteins : CluSTrQ12768
Domain families : Pfam (Sanger)Strumpellin (PF10266)   
Domain families : Pfam (NCBI)pfam10266   
DMDM Disease mutations9897
Blocks (Seattle)Q12768
Human Protein AtlasENSG00000164961
Peptide AtlasQ12768
IPIIPI00029175   IPI00976079   IPI00976414   IPI00977066   
Protein Interaction databases
IntAct (EBI)Q12768
Ontologies - Pathways
Ontology : AmiGOendosome  endoplasmic reticulum  cytosol  cell death  endosomal transport  WASH complex  
Ontology : EGO-EBIendosome  endoplasmic reticulum  cytosol  cell death  endosomal transport  WASH complex  
Protein Interaction DatabaseKIAA0196
DoCM (Curated mutations)KIAA0196
Wikipedia pathwaysKIAA0196
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerKIAA0196 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIAA0196
Exome Variant ServerKIAA0196
SNP (GeneSNP Utah)KIAA0196
SNP : HGBaseKIAA0196
Genetic variants : HAPMAPKIAA0196
Genomic Variants (DGV)KIAA0196 [DGVbeta]
ICGC Data PortalENSG00000164961 
Somatic Mutations in Cancer : COSMICKIAA0196 
CONAN: Copy Number AnalysisKIAA0196 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
DECIPHER (Syndromes)8:126036503-126104061
Mutations and Diseases : HGMDKIAA0196
OMIM220210    603563    610657   
NextProtQ12768 [Medical]
Disease Genetic AssociationKIAA0196
Huge Navigator KIAA0196 [HugePedia]  KIAA0196 [HugeCancerGEM]
snp3D : Map Gene to Disease9897
DGIdb (Drug Gene Interaction db)KIAA0196
General knowledge
Homologs : HomoloGeneKIAA0196
Homology/Alignments : Family Browser (UCSC)KIAA0196
Phylogenetic Trees/Animal Genes : TreeFamKIAA0196
Chemical/Protein Interactions : CTD9897
Chemical/Pharm GKB GenePA142671624
Clinical trialKIAA0196
Cancer Resource (Charite)ENSG00000164961
Other databases
PubMed32 Pubmed reference(s) in Entrez
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI


Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 16:26:19 CET 2015

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