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KIAA0226 (KIAA0226)

Identity

Other aliasRUBICON
SCAR15
HGNC (Hugo) KIAA0226
LocusID (NCBI) 9711
Atlas_Id 64851
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 197398265 and ends at 197476570 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KIAA0226   28991
Cards
Entrez_Gene (NCBI)KIAA0226  9711  KIAA0226
AliasesRUBICON; SCAR15
GeneCards (Weizmann)KIAA0226
Ensembl hg19 (Hinxton)ENSG00000145016 [Gene_View]  chr3:197398265-197476570 [Contig_View]  KIAA0226 [Vega]
Ensembl hg38 (Hinxton)ENSG00000145016 [Gene_View]  chr3:197398265-197476570 [Contig_View]  KIAA0226 [Vega]
ICGC DataPortalENSG00000145016
TCGA cBioPortalKIAA0226
AceView (NCBI)KIAA0226
Genatlas (Paris)KIAA0226
WikiGenes9711
SOURCE (Princeton)KIAA0226
Genetics Home Reference (NIH)KIAA0226
Genomic and cartography
GoldenPath hg19 (UCSC)KIAA0226  -     chr3:197398265-197476570 -  3q29   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KIAA0226  -     3q29   [Description]    (hg38-Dec_2013)
EnsemblKIAA0226 - 3q29 [CytoView hg19]  KIAA0226 - 3q29 [CytoView hg38]
Mapping of homologs : NCBIKIAA0226 [Mapview hg19]  KIAA0226 [Mapview hg38]
OMIM613516   615705   
Gene and transcription
Genbank (Entrez)AI796534 AK295625 BC014173 BC033615 BC160011
RefSeq transcript (Entrez)NM_001145642 NM_014687
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_034153 NT_005612 NW_004929312
Consensus coding sequences : CCDS (NCBI)KIAA0226
Cluster EST : UnigeneHs.478868 [ NCBI ]
CGAP (NCI)Hs.478868
Alternative Splicing GalleryENSG00000145016
Gene ExpressionKIAA0226 [ NCBI-GEO ]   KIAA0226 [ EBI - ARRAY_EXPRESS ]   KIAA0226 [ SEEK ]   KIAA0226 [ MEM ]
Gene Expression Viewer (FireBrowse)KIAA0226 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9711
GTEX Portal (Tissue expression)KIAA0226
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92622   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92622  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92622
Splice isoforms : SwissVarQ92622
PhosPhoSitePlusQ92622
Domaine pattern : Prosite (Expaxy)RUN (PS50826)   
Domains : Interpro (EBI)DUF4206    Run   
Domain families : Pfam (Sanger)DUF4206 (PF13901)    RUN (PF02759)   
Domain families : Pfam (NCBI)pfam13901    pfam02759   
Domain families : Smart (EMBL)RUN (SM00593)  
Conserved Domain (NCBI)KIAA0226
DMDM Disease mutations9711
Blocks (Seattle)KIAA0226
SuperfamilyQ92622
Human Protein AtlasENSG00000145016
Peptide AtlasQ92622
IPIIPI00853404   IPI00924876   IPI00060439   IPI00022496   IPI00925566   IPI00925817   
Protein Interaction databases
DIP (DOE-UCLA)Q92622
IntAct (EBI)Q92622
FunCoupENSG00000145016
BioGRIDKIAA0226
STRING (EMBL)KIAA0226
ZODIACKIAA0226
Ontologies - Pathways
QuickGOQ92622
Ontology : AmiGOprotein binding  lysosome  early endosome  late endosome  Golgi apparatus  endocytosis  autophagy  negative regulation of autophagy  negative regulation of phosphatidylinositol 3-kinase activity  negative regulation of endocytosis  negative regulation of autophagosome maturation  
Ontology : EGO-EBIprotein binding  lysosome  early endosome  late endosome  Golgi apparatus  endocytosis  autophagy  negative regulation of autophagy  negative regulation of phosphatidylinositol 3-kinase activity  negative regulation of endocytosis  negative regulation of autophagosome maturation  
NDEx NetworkKIAA0226
Atlas of Cancer Signalling NetworkKIAA0226
Wikipedia pathwaysKIAA0226
Orthology - Evolution
OrthoDB9711
GeneTree (enSembl)ENSG00000145016
Phylogenetic Trees/Animal Genes : TreeFamKIAA0226
HOVERGENQ92622
HOGENOMQ92622
Homologs : HomoloGeneKIAA0226
Homology/Alignments : Family Browser (UCSC)KIAA0226
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKIAA0226 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIAA0226
dbVarKIAA0226
ClinVarKIAA0226
1000_GenomesKIAA0226 
Exome Variant ServerKIAA0226
ExAC (Exome Aggregation Consortium)KIAA0226 (select the gene name)
Genetic variants : HAPMAP9711
Genomic Variants (DGV)KIAA0226 [DGVbeta]
DECIPHER (Syndromes)3:197398265-197476570  ENSG00000145016
CONAN: Copy Number AnalysisKIAA0226 
Mutations
ICGC Data PortalKIAA0226 
TCGA Data PortalKIAA0226 
Broad Tumor PortalKIAA0226
OASIS PortalKIAA0226 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKIAA0226  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKIAA0226
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch KIAA0226
DgiDB (Drug Gene Interaction Database)KIAA0226
DoCM (Curated mutations)KIAA0226 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KIAA0226 (select a term)
intoGenKIAA0226
Cancer3DKIAA0226(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613516    615705   
Orphanet
MedgenKIAA0226
Genetic Testing Registry KIAA0226
NextProtQ92622 [Medical]
TSGene9711
GENETestsKIAA0226
Huge Navigator KIAA0226 [HugePedia]
snp3D : Map Gene to Disease9711
BioCentury BCIQKIAA0226
ClinGenKIAA0226
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9711
Chemical/Pharm GKB GenePA134887849
Clinical trialKIAA0226
Miscellaneous
canSAR (ICR)KIAA0226 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKIAA0226
EVEXKIAA0226
GoPubMedKIAA0226
iHOPKIAA0226
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:39 CET 2017

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