Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KIAA0319 (KIAA0319)

Identity

Alias_symbol (synonym)NMIG
Other aliasDYLX2
DYX2
HGNC (Hugo) KIAA0319
LocusID (NCBI) 9856
Atlas_Id 64853
Location 6p22.3  [Link to chromosome band 6p22]
Location_base_pair Starts at 24544104 and ends at 24646155 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KIAA0319   21580
Cards
Entrez_Gene (NCBI)KIAA0319  9856  KIAA0319
AliasesDYLX2; DYX2; NMIG
GeneCards (Weizmann)KIAA0319
Ensembl hg19 (Hinxton)ENSG00000137261 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137261 [Gene_View]  chr6:24544104-24646155 [Contig_View]  KIAA0319 [Vega]
ICGC DataPortalENSG00000137261
TCGA cBioPortalKIAA0319
AceView (NCBI)KIAA0319
Genatlas (Paris)KIAA0319
WikiGenes9856
SOURCE (Princeton)KIAA0319
Genetics Home Reference (NIH)KIAA0319
Genomic and cartography
GoldenPath hg38 (UCSC)KIAA0319  -     chr6:24544104-24646155 -  6p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KIAA0319  -     6p22.3   [Description]    (hg19-Feb_2009)
EnsemblKIAA0319 - 6p22.3 [CytoView hg19]  KIAA0319 - 6p22.3 [CytoView hg38]
Mapping of homologs : NCBIKIAA0319 [Mapview hg19]  KIAA0319 [Mapview hg38]
OMIM600202   609269   
Gene and transcription
Genbank (Entrez)AB002317 AF086065 AK295008 AK296310 AK296426
RefSeq transcript (Entrez)NM_001168374 NM_001168375 NM_001168376 NM_001168377 NM_001252328 NM_001350403 NM_001350404 NM_001350405 NM_001350406 NM_001350407 NM_001350408 NM_001350409 NM_001350410 NM_014809
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KIAA0319
Cluster EST : UnigeneHs.26441 [ NCBI ]
CGAP (NCI)Hs.26441
Alternative Splicing GalleryENSG00000137261
Gene ExpressionKIAA0319 [ NCBI-GEO ]   KIAA0319 [ EBI - ARRAY_EXPRESS ]   KIAA0319 [ SEEK ]   KIAA0319 [ MEM ]
Gene Expression Viewer (FireBrowse)KIAA0319 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9856
GTEX Portal (Tissue expression)KIAA0319
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VV43   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VV43  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VV43
Splice isoforms : SwissVarQ5VV43
PhosPhoSitePlusQ5VV43
Domaine pattern : Prosite (Expaxy)MANSC (PS50986)    PKD (PS50093)   
Domains : Interpro (EBI)FN3_dom    MANSC_dom    MANSC_N    PKD/Chitinase_dom    PKD/REJ-like    PKD_dom   
Domain families : Pfam (Sanger)REJ (PF02010)   
Domain families : Pfam (NCBI)pfam02010   
Domain families : Smart (EMBL)FN3 (SM00060)  MANEC (SM00765)  PKD (SM00089)  
Conserved Domain (NCBI)KIAA0319
DMDM Disease mutations9856
Blocks (Seattle)KIAA0319
PDB (SRS)2E7M   
PDB (PDBSum)2E7M   
PDB (IMB)2E7M   
PDB (RSDB)2E7M   
Structural Biology KnowledgeBase2E7M   
SCOP (Structural Classification of Proteins)2E7M   
CATH (Classification of proteins structures)2E7M   
SuperfamilyQ5VV43
Human Protein AtlasENSG00000137261
Peptide AtlasQ5VV43
HPRD18713
IPIIPI00006524   IPI00921389   IPI00921442   IPI00922852   
Protein Interaction databases
DIP (DOE-UCLA)Q5VV43
IntAct (EBI)Q5VV43
FunCoupENSG00000137261
BioGRIDKIAA0319
STRING (EMBL)KIAA0319
ZODIACKIAA0319
Ontologies - Pathways
QuickGOQ5VV43
Ontology : AmiGOneuron migration  protein binding  early endosome  plasma membrane  plasma membrane  integral component of membrane  clathrin-coated vesicle membrane  early endosome membrane  membrane organization  negative regulation of dendrite development  
Ontology : EGO-EBIneuron migration  protein binding  early endosome  plasma membrane  plasma membrane  integral component of membrane  clathrin-coated vesicle membrane  early endosome membrane  membrane organization  negative regulation of dendrite development  
NDEx NetworkKIAA0319
Atlas of Cancer Signalling NetworkKIAA0319
Wikipedia pathwaysKIAA0319
Orthology - Evolution
OrthoDB9856
GeneTree (enSembl)ENSG00000137261
Phylogenetic Trees/Animal Genes : TreeFamKIAA0319
HOVERGENQ5VV43
HOGENOMQ5VV43
Homologs : HomoloGeneKIAA0319
Homology/Alignments : Family Browser (UCSC)KIAA0319
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKIAA0319 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIAA0319
dbVarKIAA0319
ClinVarKIAA0319
1000_GenomesKIAA0319 
Exome Variant ServerKIAA0319
ExAC (Exome Aggregation Consortium)KIAA0319 (select the gene name)
Genetic variants : HAPMAP9856
Genomic Variants (DGV)KIAA0319 [DGVbeta]
DECIPHERKIAA0319 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKIAA0319 
Mutations
ICGC Data PortalKIAA0319 
TCGA Data PortalKIAA0319 
Broad Tumor PortalKIAA0319
OASIS PortalKIAA0319 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKIAA0319  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKIAA0319
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KIAA0319
DgiDB (Drug Gene Interaction Database)KIAA0319
DoCM (Curated mutations)KIAA0319 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KIAA0319 (select a term)
intoGenKIAA0319
Cancer3DKIAA0319(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600202    609269   
Orphanet
MedgenKIAA0319
Genetic Testing Registry KIAA0319
NextProtQ5VV43 [Medical]
TSGene9856
GENETestsKIAA0319
Target ValidationKIAA0319
Huge Navigator KIAA0319 [HugePedia]
snp3D : Map Gene to Disease9856
BioCentury BCIQKIAA0319
ClinGenKIAA0319
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9856
Chemical/Pharm GKB GenePA134936721
Clinical trialKIAA0319
Miscellaneous
canSAR (ICR)KIAA0319 (select the gene name)
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKIAA0319
EVEXKIAA0319
GoPubMedKIAA0319
iHOPKIAA0319
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:11:47 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.