Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KIAA0556 (KIAA0556)

Identity

Alias_symbol (synonym)JBTS26
Other alias
HGNC (Hugo) KIAA0556
LocusID (NCBI) 23247
Atlas_Id 54405
Location 16p12.1  [Link to chromosome band 16p12]
Location_base_pair Starts at 27550147 and ends at 27780371 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KIAA0556 (16p12.1) / KIAA0556 (16p12.1)KIAA0556 (16p12.1) / LETM2 (8p11.23)KIAA0556 (16p12.1) / LSM1 (8p11.23)
KIAA0556 (16p12.1) / NECAB2 (16q23.3)KIAA0556 16p12.1 / NECAB2 16q23.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)KIAA0556   29068
Cards
Entrez_Gene (NCBI)KIAA0556  23247  KIAA0556
AliasesJBTS26
GeneCards (Weizmann)KIAA0556
Ensembl hg19 (Hinxton)ENSG00000047578 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000047578 [Gene_View]  chr16:27550147-27780371 [Contig_View]  KIAA0556 [Vega]
ICGC DataPortalENSG00000047578
TCGA cBioPortalKIAA0556
AceView (NCBI)KIAA0556
Genatlas (Paris)KIAA0556
WikiGenes23247
SOURCE (Princeton)KIAA0556
Genetics Home Reference (NIH)KIAA0556
Genomic and cartography
GoldenPath hg38 (UCSC)KIAA0556  -     chr16:27550147-27780371 +  16p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KIAA0556  -     16p12.1   [Description]    (hg19-Feb_2009)
EnsemblKIAA0556 - 16p12.1 [CytoView hg19]  KIAA0556 - 16p12.1 [CytoView hg38]
Mapping of homologs : NCBIKIAA0556 [Mapview hg19]  KIAA0556 [Mapview hg38]
OMIM616650   616784   
Gene and transcription
Genbank (Entrez)AB011128 AK097485 AK295261 AK315974 BC041053
RefSeq transcript (Entrez)NM_015202
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KIAA0556
Cluster EST : UnigeneHs.460459 [ NCBI ]
CGAP (NCI)Hs.460459
Alternative Splicing GalleryENSG00000047578
Gene ExpressionKIAA0556 [ NCBI-GEO ]   KIAA0556 [ EBI - ARRAY_EXPRESS ]   KIAA0556 [ SEEK ]   KIAA0556 [ MEM ]
Gene Expression Viewer (FireBrowse)KIAA0556 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23247
GTEX Portal (Tissue expression)KIAA0556
Human Protein AtlasENSG00000047578-KIAA0556 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60303   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60303  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60303
Splice isoforms : SwissVarO60303
PhosPhoSitePlusO60303
Domains : Interpro (EBI)DUF4457    KIAA0556   
Domain families : Pfam (Sanger)DUF4457 (PF14652)   
Domain families : Pfam (NCBI)pfam14652   
Conserved Domain (NCBI)KIAA0556
DMDM Disease mutations23247
Blocks (Seattle)KIAA0556
SuperfamilyO60303
Human Protein Atlas [tissue]ENSG00000047578-KIAA0556 [tissue]
Peptide AtlasO60303
HPRD13806
IPIIPI00030790   IPI00297877   
Protein Interaction databases
DIP (DOE-UCLA)O60303
IntAct (EBI)O60303
FunCoupENSG00000047578
BioGRIDKIAA0556
STRING (EMBL)KIAA0556
ZODIACKIAA0556
Ontologies - Pathways
QuickGOO60303
Ontology : AmiGOextracellular space  cytoplasm  cytoskeleton  cell projection  
Ontology : EGO-EBIextracellular space  cytoplasm  cytoskeleton  cell projection  
NDEx NetworkKIAA0556
Atlas of Cancer Signalling NetworkKIAA0556
Wikipedia pathwaysKIAA0556
Orthology - Evolution
OrthoDB23247
GeneTree (enSembl)ENSG00000047578
Phylogenetic Trees/Animal Genes : TreeFamKIAA0556
HOVERGENO60303
HOGENOMO60303
Homologs : HomoloGeneKIAA0556
Homology/Alignments : Family Browser (UCSC)KIAA0556
Gene fusions - Rearrangements
Fusion : MitelmanKIAA0556/LSM1 [16p12.1/8p11.23]  
Fusion : MitelmanKIAA0556/NECAB2 [16p12.1/16q23.3]  [t(16;16)(p12;q23)]  
Fusion: TCGA_MDACCKIAA0556 16p12.1 NECAB2 16q23.3 BRCA
Tumor Fusion PortalKIAA0556
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKIAA0556 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIAA0556
dbVarKIAA0556
ClinVarKIAA0556
1000_GenomesKIAA0556 
Exome Variant ServerKIAA0556
ExAC (Exome Aggregation Consortium)ENSG00000047578
GNOMAD BrowserENSG00000047578
Genetic variants : HAPMAP23247
Genomic Variants (DGV)KIAA0556 [DGVbeta]
DECIPHERKIAA0556 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKIAA0556 
Mutations
ICGC Data PortalKIAA0556 
TCGA Data PortalKIAA0556 
Broad Tumor PortalKIAA0556
OASIS PortalKIAA0556 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKIAA0556  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKIAA0556
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KIAA0556
DgiDB (Drug Gene Interaction Database)KIAA0556
DoCM (Curated mutations)KIAA0556 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KIAA0556 (select a term)
intoGenKIAA0556
Cancer3DKIAA0556(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616650    616784   
Orphanet1022   
DisGeNETKIAA0556
MedgenKIAA0556
Genetic Testing Registry KIAA0556
NextProtO60303 [Medical]
TSGene23247
GENETestsKIAA0556
Target ValidationKIAA0556
Huge Navigator KIAA0556 [HugePedia]
snp3D : Map Gene to Disease23247
BioCentury BCIQKIAA0556
ClinGenKIAA0556
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23247
Chemical/Pharm GKB GenePA162392880
Clinical trialKIAA0556
Miscellaneous
canSAR (ICR)KIAA0556 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKIAA0556
EVEXKIAA0556
GoPubMedKIAA0556
iHOPKIAA0556
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:18:50 CET 2017

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