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KIAA1109 (KIAA1109)

Identity

Alias_symbol (synonym)FLJ21404
FSA
KIAA1371
Tweek
Other alias
HGNC (Hugo) KIAA1109
LocusID (NCBI) 84162
Atlas_Id 64872
Location 4q27  [Link to chromosome band 4q27]
Location_base_pair Starts at 123091758 and ends at 123283914 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KIAA1109 (4q27) / ADGRA3 (4p15.2)KIAA1109 (4q27) / CHODL (21q21.1)KIAA1109 (4q27) / SSH2 (17q11.2)
KIAA1109 (4q27) / TMEM132D (12q24.33)KIAA1109 CHODLKIAA1109 GPR125

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KIAA1109   26953
Cards
Entrez_Gene (NCBI)KIAA1109  84162  KIAA1109
AliasesFSA; Tweek
GeneCards (Weizmann)KIAA1109
Ensembl hg19 (Hinxton)ENSG00000138688 [Gene_View]  chr4:123091758-123283914 [Contig_View]  KIAA1109 [Vega]
Ensembl hg38 (Hinxton)ENSG00000138688 [Gene_View]  chr4:123091758-123283914 [Contig_View]  KIAA1109 [Vega]
ICGC DataPortalENSG00000138688
TCGA cBioPortalKIAA1109
AceView (NCBI)KIAA1109
Genatlas (Paris)KIAA1109
WikiGenes84162
SOURCE (Princeton)KIAA1109
Genetics Home Reference (NIH)KIAA1109
Genomic and cartography
GoldenPath hg19 (UCSC)KIAA1109  -     chr4:123091758-123283914 +  4q27   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KIAA1109  -     4q27   [Description]    (hg38-Dec_2013)
EnsemblKIAA1109 - 4q27 [CytoView hg19]  KIAA1109 - 4q27 [CytoView hg38]
Mapping of homologs : NCBIKIAA1109 [Mapview hg19]  KIAA1109 [Mapview hg38]
OMIM611565   
Gene and transcription
Genbank (Entrez)AB029032 AB037792 AK024043 AK025057 AK095216
RefSeq transcript (Entrez)NM_015312 NM_032202
RefSeq genomic (Entrez)NC_000004 NC_018915 NG_015813 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)KIAA1109
Cluster EST : UnigeneHs.408142 [ NCBI ]
CGAP (NCI)Hs.408142
Alternative Splicing GalleryENSG00000138688
Gene ExpressionKIAA1109 [ NCBI-GEO ]   KIAA1109 [ EBI - ARRAY_EXPRESS ]   KIAA1109 [ SEEK ]   KIAA1109 [ MEM ]
Gene Expression Viewer (FireBrowse)KIAA1109 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84162
GTEX Portal (Tissue expression)KIAA1109
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2LD37   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2LD37  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2LD37
Splice isoforms : SwissVarQ2LD37
PhosPhoSitePlusQ2LD37
Domains : Interpro (EBI)Fragile_site-assoc_C   
Domain families : Pfam (Sanger)FSA_C (PF10479)   
Domain families : Pfam (NCBI)pfam10479   
Conserved Domain (NCBI)KIAA1109
DMDM Disease mutations84162
Blocks (Seattle)KIAA1109
SuperfamilyQ2LD37
Human Protein AtlasENSG00000138688
Peptide AtlasQ2LD37
IPIIPI00852643   IPI00398012   IPI00885111   IPI00885130   IPI00251161   IPI00853372   IPI00853613   IPI00735270   IPI00852932   IPI00853551   
Protein Interaction databases
DIP (DOE-UCLA)Q2LD37
IntAct (EBI)Q2LD37
FunCoupENSG00000138688
BioGRIDKIAA1109
STRING (EMBL)KIAA1109
ZODIACKIAA1109
Ontologies - Pathways
QuickGOQ2LD37
Ontology : AmiGOregulation of cell growth  protein binding  nucleus  membrane  integral component of membrane  regulation of epithelial cell differentiation  
Ontology : EGO-EBIregulation of cell growth  protein binding  nucleus  membrane  integral component of membrane  regulation of epithelial cell differentiation  
NDEx NetworkKIAA1109
Atlas of Cancer Signalling NetworkKIAA1109
Wikipedia pathwaysKIAA1109
Orthology - Evolution
OrthoDB84162
GeneTree (enSembl)ENSG00000138688
Phylogenetic Trees/Animal Genes : TreeFamKIAA1109
HOVERGENQ2LD37
HOGENOMQ2LD37
Homologs : HomoloGeneKIAA1109
Homology/Alignments : Family Browser (UCSC)KIAA1109
Gene fusions - Rearrangements
Fusion: TCGAKIAA1109 CHODL
Fusion: TCGAKIAA1109 GPR125
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKIAA1109 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIAA1109
dbVarKIAA1109
ClinVarKIAA1109
1000_GenomesKIAA1109 
Exome Variant ServerKIAA1109
ExAC (Exome Aggregation Consortium)KIAA1109 (select the gene name)
Genetic variants : HAPMAP84162
Genomic Variants (DGV)KIAA1109 [DGVbeta]
DECIPHER (Syndromes)4:123091758-123283914  ENSG00000138688
CONAN: Copy Number AnalysisKIAA1109 
Mutations
ICGC Data PortalKIAA1109 
TCGA Data PortalKIAA1109 
Broad Tumor PortalKIAA1109
OASIS PortalKIAA1109 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKIAA1109  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKIAA1109
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KIAA1109
DgiDB (Drug Gene Interaction Database)KIAA1109
DoCM (Curated mutations)KIAA1109 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KIAA1109 (select a term)
intoGenKIAA1109
Cancer3DKIAA1109(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611565   
Orphanet
MedgenKIAA1109
Genetic Testing Registry KIAA1109
NextProtQ2LD37 [Medical]
TSGene84162
GENETestsKIAA1109
Huge Navigator KIAA1109 [HugePedia]
snp3D : Map Gene to Disease84162
BioCentury BCIQKIAA1109
ClinGenKIAA1109
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84162
Chemical/Pharm GKB GenePA142671621
Clinical trialKIAA1109
Miscellaneous
canSAR (ICR)KIAA1109 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKIAA1109
EVEXKIAA1109
GoPubMedKIAA1109
iHOPKIAA1109
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:44 CET 2017

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