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KIAA1456 (KIAA1456)

Identity

Alias_namesC8orf79
chromosome 8 open reading frame 79
Alias_symbol (synonym)FLJ36980
Other aliasTRM9L
HGNC (Hugo) KIAA1456
LocusID (NCBI) 57604
Atlas_Id 53730
Location 8p22  [Link to chromosome band 8p22]
Location_base_pair Starts at 13012264 and ends at 13029775 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KIAA1456   26725
Cards
Entrez_Gene (NCBI)KIAA1456  57604  KIAA1456
AliasesC8orf79; TRM9L
GeneCards (Weizmann)KIAA1456
Ensembl hg19 (Hinxton)ENSG00000250305 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250305 [Gene_View]  chr8:13012264-13029775 [Contig_View]  KIAA1456 [Vega]
ICGC DataPortalENSG00000250305
TCGA cBioPortalKIAA1456
AceView (NCBI)KIAA1456
Genatlas (Paris)KIAA1456
WikiGenes57604
SOURCE (Princeton)KIAA1456
Genetics Home Reference (NIH)KIAA1456
Genomic and cartography
GoldenPath hg38 (UCSC)KIAA1456  -     chr8:13012264-13029775 +  8p22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KIAA1456  -     8p22   [Description]    (hg19-Feb_2009)
EnsemblKIAA1456 - 8p22 [CytoView hg19]  KIAA1456 - 8p22 [CytoView hg38]
Mapping of homologs : NCBIKIAA1456 [Mapview hg19]  KIAA1456 [Mapview hg38]
OMIM615666   
Gene and transcription
Genbank (Entrez)AB040889 AK094299 AK125638 AK296010 AK307825
RefSeq transcript (Entrez)NM_001099677 NM_020844
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KIAA1456
Cluster EST : UnigeneHs.202521 [ NCBI ]
CGAP (NCI)Hs.202521
Alternative Splicing GalleryENSG00000250305
Gene ExpressionKIAA1456 [ NCBI-GEO ]   KIAA1456 [ EBI - ARRAY_EXPRESS ]   KIAA1456 [ SEEK ]   KIAA1456 [ MEM ]
Gene Expression Viewer (FireBrowse)KIAA1456 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57604
GTEX Portal (Tissue expression)KIAA1456
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P272   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P272  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P272
Splice isoforms : SwissVarQ9P272
PhosPhoSitePlusQ9P272
Domains : Interpro (EBI)Kiaa1456    Methyltransf_11    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Methyltransf_11 (PF08241)   
Domain families : Pfam (NCBI)pfam08241   
Conserved Domain (NCBI)KIAA1456
DMDM Disease mutations57604
Blocks (Seattle)KIAA1456
SuperfamilyQ9P272
Human Protein AtlasENSG00000250305
Peptide AtlasQ9P272
HPRD13862
IPIIPI00167751   IPI00292819   IPI01019047   
Protein Interaction databases
DIP (DOE-UCLA)Q9P272
IntAct (EBI)Q9P272
FunCoupENSG00000250305
BioGRIDKIAA1456
STRING (EMBL)KIAA1456
ZODIACKIAA1456
Ontologies - Pathways
QuickGOQ9P272
Ontology : AmiGOtRNA binding  tRNA wobble uridine modification  nucleus  cytoplasm  cytoplasm  tRNA modification  tRNA methyltransferase activity  ferrous iron binding  tRNA (uracil) methyltransferase activity  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  tRNA methylation  oxidation-reduction process  
Ontology : EGO-EBItRNA binding  tRNA wobble uridine modification  nucleus  cytoplasm  cytoplasm  tRNA modification  tRNA methyltransferase activity  ferrous iron binding  tRNA (uracil) methyltransferase activity  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  tRNA methylation  oxidation-reduction process  
NDEx NetworkKIAA1456
Atlas of Cancer Signalling NetworkKIAA1456
Wikipedia pathwaysKIAA1456
Orthology - Evolution
OrthoDB57604
GeneTree (enSembl)ENSG00000250305
Phylogenetic Trees/Animal Genes : TreeFamKIAA1456
HOVERGENQ9P272
HOGENOMQ9P272
Homologs : HomoloGeneKIAA1456
Homology/Alignments : Family Browser (UCSC)KIAA1456
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKIAA1456 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIAA1456
dbVarKIAA1456
ClinVarKIAA1456
1000_GenomesKIAA1456 
Exome Variant ServerKIAA1456
ExAC (Exome Aggregation Consortium)KIAA1456 (select the gene name)
Genetic variants : HAPMAP57604
Genomic Variants (DGV)KIAA1456 [DGVbeta]
DECIPHERKIAA1456 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKIAA1456 
Mutations
ICGC Data PortalKIAA1456 
TCGA Data PortalKIAA1456 
Broad Tumor PortalKIAA1456
OASIS PortalKIAA1456 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKIAA1456  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKIAA1456
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KIAA1456
DgiDB (Drug Gene Interaction Database)KIAA1456
DoCM (Curated mutations)KIAA1456 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KIAA1456 (select a term)
intoGenKIAA1456
Cancer3DKIAA1456(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615666   
Orphanet
MedgenKIAA1456
Genetic Testing Registry KIAA1456
NextProtQ9P272 [Medical]
TSGene57604
GENETestsKIAA1456
Target ValidationKIAA1456
Huge Navigator KIAA1456 [HugePedia]
snp3D : Map Gene to Disease57604
BioCentury BCIQKIAA1456
ClinGenKIAA1456
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57604
Chemical/Pharm GKB GenePA143485343
Clinical trialKIAA1456
Miscellaneous
canSAR (ICR)KIAA1456 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKIAA1456
EVEXKIAA1456
GoPubMedKIAA1456
iHOPKIAA1456
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:39:31 CEST 2017

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