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KIAA1549 (KIAA1549)

Identity

Other alias-
HGNC (Hugo) KIAA1549
LocusID (NCBI) 57670
Atlas_Id 52621
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 138831381 and ends at 138981318 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BRAF (7q34) / KIAA1549 (7q34)KIAA1549 (7q34) / BRAF (7q34)KIAA1549 (7q34) / GTF3A (13q12.2)
KIAA1549 (7q34) / KIAA1549 (7q34)KIAA1549 7q34 / BRAF 7q34KIAA1549 7q34 / BRAF 7q34

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KIAA1549   22219
Cards
Entrez_Gene (NCBI)KIAA1549  57670  KIAA1549
Aliases
GeneCards (Weizmann)KIAA1549
Ensembl hg19 (Hinxton)ENSG00000122778 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122778 [Gene_View]  chr7:138831381-138981318 [Contig_View]  KIAA1549 [Vega]
ICGC DataPortalENSG00000122778
TCGA cBioPortalKIAA1549
AceView (NCBI)KIAA1549
Genatlas (Paris)KIAA1549
WikiGenes57670
SOURCE (Princeton)KIAA1549
Genetics Home Reference (NIH)KIAA1549
Genomic and cartography
GoldenPath hg38 (UCSC)KIAA1549  -     chr7:138831381-138981318 -  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KIAA1549  -     7q34   [Description]    (hg19-Feb_2009)
EnsemblKIAA1549 - 7q34 [CytoView hg19]  KIAA1549 - 7q34 [CytoView hg38]
Mapping of homologs : NCBIKIAA1549 [Mapview hg19]  KIAA1549 [Mapview hg38]
OMIM613344   
Gene and transcription
Genbank (Entrez)AB046769 AK021793 AK096022 AL136736 AM989468
RefSeq transcript (Entrez)NM_001164665 NM_020910
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KIAA1549
Cluster EST : UnigeneHs.605380 [ NCBI ]
CGAP (NCI)Hs.605380
Alternative Splicing GalleryENSG00000122778
Gene ExpressionKIAA1549 [ NCBI-GEO ]   KIAA1549 [ EBI - ARRAY_EXPRESS ]   KIAA1549 [ SEEK ]   KIAA1549 [ MEM ]
Gene Expression Viewer (FireBrowse)KIAA1549 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57670
GTEX Portal (Tissue expression)KIAA1549
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCM3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCM3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCM3
Splice isoforms : SwissVarQ9HCM3
PhosPhoSitePlusQ9HCM3
Domains : Interpro (EBI)DUF3827   
Domain families : Pfam (Sanger)DUF3827 (PF12877)   
Domain families : Pfam (NCBI)pfam12877   
Conserved Domain (NCBI)KIAA1549
DMDM Disease mutations57670
Blocks (Seattle)KIAA1549
SuperfamilyQ9HCM3
Human Protein AtlasENSG00000122778
Peptide AtlasQ9HCM3
IPIIPI00896475   IPI00926338   IPI01009059   IPI01008832   IPI00385675   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCM3
IntAct (EBI)Q9HCM3
FunCoupENSG00000122778
BioGRIDKIAA1549
STRING (EMBL)KIAA1549
ZODIACKIAA1549
Ontologies - Pathways
QuickGOQ9HCM3
Ontology : AmiGOplasma membrane  integral component of membrane  
Ontology : EGO-EBIplasma membrane  integral component of membrane  
NDEx NetworkKIAA1549
Atlas of Cancer Signalling NetworkKIAA1549
Wikipedia pathwaysKIAA1549
Orthology - Evolution
OrthoDB57670
GeneTree (enSembl)ENSG00000122778
Phylogenetic Trees/Animal Genes : TreeFamKIAA1549
HOVERGENQ9HCM3
HOGENOMQ9HCM3
Homologs : HomoloGeneKIAA1549
Homology/Alignments : Family Browser (UCSC)KIAA1549
Gene fusions - Rearrangements
Fusion: TCGAKIAA1549 7q34 BRAF 7q34 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKIAA1549 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIAA1549
dbVarKIAA1549
ClinVarKIAA1549
1000_GenomesKIAA1549 
Exome Variant ServerKIAA1549
ExAC (Exome Aggregation Consortium)KIAA1549 (select the gene name)
Genetic variants : HAPMAP57670
Genomic Variants (DGV)KIAA1549 [DGVbeta]
DECIPHERKIAA1549 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKIAA1549 
Mutations
ICGC Data PortalKIAA1549 
TCGA Data PortalKIAA1549 
Broad Tumor PortalKIAA1549
OASIS PortalKIAA1549 [ Somatic mutations - Copy number]
Cancer Gene: CensusKIAA1549 
Somatic Mutations in Cancer : COSMICKIAA1549  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKIAA1549
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch KIAA1549
DgiDB (Drug Gene Interaction Database)KIAA1549
DoCM (Curated mutations)KIAA1549 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KIAA1549 (select a term)
intoGenKIAA1549
Cancer3DKIAA1549(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613344   
Orphanet19659   
MedgenKIAA1549
Genetic Testing Registry KIAA1549
NextProtQ9HCM3 [Medical]
TSGene57670
GENETestsKIAA1549
Target ValidationKIAA1549
Huge Navigator KIAA1549 [HugePedia]
snp3D : Map Gene to Disease57670
BioCentury BCIQKIAA1549
ClinGenKIAA1549
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57670
Chemical/Pharm GKB GenePA162393138
Clinical trialKIAA1549
Miscellaneous
canSAR (ICR)KIAA1549 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKIAA1549
EVEXKIAA1549
GoPubMedKIAA1549
iHOPKIAA1549
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:14:24 CEST 2017

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