Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KIAA1671 (KIAA1671)

Identity

Other alias-
HGNC (Hugo) KIAA1671
LocusID (NCBI) 85379
Atlas_Id 52198
Location 22q11.23  [Link to chromosome band 22q11]
Location_base_pair Starts at 25423941 and ends at 25593415 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AKAP1 (17q22) / KIAA1671 (22q11.23)KIAA1671 (22q11.23) / BEST1 (11q12.3)KIAA1671 (22q11.23) / KIAA1671 (22q11.23)
PLEKHM1P1 (17q24.1) / KIAA1671 (22q11.23)PPIL2 (22q11.21) / KIAA1671 (22q11.23)PPIL2 22q11.21 / KIAA1671 22q11.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KIAA1671   29345
Cards
Entrez_Gene (NCBI)KIAA1671  85379  KIAA1671
Aliases
GeneCards (Weizmann)KIAA1671
Ensembl hg19 (Hinxton)ENSG00000197077 [Gene_View]  chr22:25423941-25593415 [Contig_View]  KIAA1671 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197077 [Gene_View]  chr22:25423941-25593415 [Contig_View]  KIAA1671 [Vega]
ICGC DataPortalENSG00000197077
TCGA cBioPortalKIAA1671
AceView (NCBI)KIAA1671
Genatlas (Paris)KIAA1671
WikiGenes85379
SOURCE (Princeton)KIAA1671
Genetics Home Reference (NIH)KIAA1671
Genomic and cartography
GoldenPath hg19 (UCSC)KIAA1671  -     chr22:25423941-25593415 +  22q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KIAA1671  -     22q11.23   [Description]    (hg38-Dec_2013)
EnsemblKIAA1671 - 22q11.23 [CytoView hg19]  KIAA1671 - 22q11.23 [CytoView hg38]
Mapping of homologs : NCBIKIAA1671 [Mapview hg19]  KIAA1671 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB051458 AI340196 AK025418 AK057551 AL832019
RefSeq transcript (Entrez)NM_001145206
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)KIAA1671
Cluster EST : UnigeneHs.419171 [ NCBI ]
CGAP (NCI)Hs.419171
Alternative Splicing GalleryENSG00000197077
Gene ExpressionKIAA1671 [ NCBI-GEO ]   KIAA1671 [ EBI - ARRAY_EXPRESS ]   KIAA1671 [ SEEK ]   KIAA1671 [ MEM ]
Gene Expression Viewer (FireBrowse)KIAA1671 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85379
GTEX Portal (Tissue expression)KIAA1671
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BY89   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BY89  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BY89
Splice isoforms : SwissVarQ9BY89
PhosPhoSitePlusQ9BY89
Domains : Interpro (EBI)Tankyrase-bd_C   
Domain families : Pfam (Sanger)Tankyrase_bdg_C (PF15327)   
Domain families : Pfam (NCBI)pfam15327   
Conserved Domain (NCBI)KIAA1671
DMDM Disease mutations85379
Blocks (Seattle)KIAA1671
SuperfamilyQ9BY89
Human Protein AtlasENSG00000197077
Peptide AtlasQ9BY89
IPIIPI00396634   IPI00845437   
Protein Interaction databases
DIP (DOE-UCLA)Q9BY89
IntAct (EBI)Q9BY89
FunCoupENSG00000197077
BioGRIDKIAA1671
STRING (EMBL)KIAA1671
ZODIACKIAA1671
Ontologies - Pathways
QuickGOQ9BY89
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkKIAA1671
Atlas of Cancer Signalling NetworkKIAA1671
Wikipedia pathwaysKIAA1671
Orthology - Evolution
OrthoDB85379
GeneTree (enSembl)ENSG00000197077
Phylogenetic Trees/Animal Genes : TreeFamKIAA1671
HOVERGENQ9BY89
HOGENOMQ9BY89
Homologs : HomoloGeneKIAA1671
Homology/Alignments : Family Browser (UCSC)KIAA1671
Gene fusions - Rearrangements
Fusion : MitelmanPPIL2/KIAA1671 [22q11.21/22q11.23]  [t(22;22)(q11;q11)]  
Fusion: TCGAPPIL2 22q11.21 KIAA1671 22q11.23 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKIAA1671 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIAA1671
dbVarKIAA1671
ClinVarKIAA1671
1000_GenomesKIAA1671 
Exome Variant ServerKIAA1671
ExAC (Exome Aggregation Consortium)KIAA1671 (select the gene name)
Genetic variants : HAPMAP85379
Genomic Variants (DGV)KIAA1671 [DGVbeta]
DECIPHER (Syndromes)22:25423941-25593415  ENSG00000197077
CONAN: Copy Number AnalysisKIAA1671 
Mutations
ICGC Data PortalKIAA1671 
TCGA Data PortalKIAA1671 
Broad Tumor PortalKIAA1671
OASIS PortalKIAA1671 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKIAA1671  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKIAA1671
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KIAA1671
DgiDB (Drug Gene Interaction Database)KIAA1671
DoCM (Curated mutations)KIAA1671 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KIAA1671 (select a term)
intoGenKIAA1671
Cancer3DKIAA1671(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKIAA1671
Genetic Testing Registry KIAA1671
NextProtQ9BY89 [Medical]
TSGene85379
GENETestsKIAA1671
Huge Navigator KIAA1671 [HugePedia]
snp3D : Map Gene to Disease85379
BioCentury BCIQKIAA1671
ClinGenKIAA1671
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85379
Chemical/Pharm GKB GenePA165378342
Clinical trialKIAA1671
Miscellaneous
canSAR (ICR)KIAA1671 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKIAA1671
EVEXKIAA1671
GoPubMedKIAA1671
iHOPKIAA1671
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:11:49 CET 2017

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