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KIAA1958 (KIAA1958)

Identity

Alias_symbol (synonym)FLJ39294
Other alias-
HGNC (Hugo) KIAA1958
LocusID (NCBI) 158405
Atlas_Id 64906
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 112486968 and ends at 112665311 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KIAA1958 (9q32) / HSDL2 (9q32)KIAA1958 (9q32) / KIAA1958 (9q32)KIAA1958 (9q32) / SNX30 (9q32)
KIAA1958 (9q32) / WDR34 (9q34.11)SNX30 (9q32) / KIAA1958 (9q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KIAA1958   23427
Cards
Entrez_Gene (NCBI)KIAA1958  158405  KIAA1958
Aliases
GeneCards (Weizmann)KIAA1958
Ensembl hg19 (Hinxton)ENSG00000165185 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165185 [Gene_View]  chr9:112486968-112665311 [Contig_View]  KIAA1958 [Vega]
ICGC DataPortalENSG00000165185
TCGA cBioPortalKIAA1958
AceView (NCBI)KIAA1958
Genatlas (Paris)KIAA1958
WikiGenes158405
SOURCE (Princeton)KIAA1958
Genetics Home Reference (NIH)KIAA1958
Genomic and cartography
GoldenPath hg38 (UCSC)KIAA1958  -     chr9:112486968-112665311 +  9q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KIAA1958  -     9q32   [Description]    (hg19-Feb_2009)
EnsemblKIAA1958 - 9q32 [CytoView hg19]  KIAA1958 - 9q32 [CytoView hg38]
Mapping of homologs : NCBIKIAA1958 [Mapview hg19]  KIAA1958 [Mapview hg38]
OMIM617390   
Gene and transcription
Genbank (Entrez)AB075838 AI498819 AK056181 AK096613 BC047922
RefSeq transcript (Entrez)NM_001287036 NM_001287038 NM_133465
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KIAA1958
Cluster EST : UnigeneHs.660744 [ NCBI ]
CGAP (NCI)Hs.660744
Alternative Splicing GalleryENSG00000165185
Gene ExpressionKIAA1958 [ NCBI-GEO ]   KIAA1958 [ EBI - ARRAY_EXPRESS ]   KIAA1958 [ SEEK ]   KIAA1958 [ MEM ]
Gene Expression Viewer (FireBrowse)KIAA1958 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158405
GTEX Portal (Tissue expression)KIAA1958
Human Protein AtlasENSG00000165185-KIAA1958 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8K9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8K9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8K9
Splice isoforms : SwissVarQ8N8K9
PhosPhoSitePlusQ8N8K9
Domains : Interpro (EBI)DUF3504   
Domain families : Pfam (Sanger)DUF3504 (PF12012)   
Domain families : Pfam (NCBI)pfam12012   
Conserved Domain (NCBI)KIAA1958
DMDM Disease mutations158405
Blocks (Seattle)KIAA1958
SuperfamilyQ8N8K9
Human Protein Atlas [tissue]ENSG00000165185-KIAA1958 [tissue]
Peptide AtlasQ8N8K9
HPRD11173
IPIIPI00329470   IPI00514013   IPI00922267   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8K9
IntAct (EBI)Q8N8K9
FunCoupENSG00000165185
BioGRIDKIAA1958
STRING (EMBL)KIAA1958
ZODIACKIAA1958
Ontologies - Pathways
QuickGOQ8N8K9
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  protein binding  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  protein binding  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  
NDEx NetworkKIAA1958
Atlas of Cancer Signalling NetworkKIAA1958
Wikipedia pathwaysKIAA1958
Orthology - Evolution
OrthoDB158405
GeneTree (enSembl)ENSG00000165185
Phylogenetic Trees/Animal Genes : TreeFamKIAA1958
HOVERGENQ8N8K9
HOGENOMQ8N8K9
Homologs : HomoloGeneKIAA1958
Homology/Alignments : Family Browser (UCSC)KIAA1958
Gene fusions - Rearrangements
Tumor Fusion PortalKIAA1958
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKIAA1958 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIAA1958
dbVarKIAA1958
ClinVarKIAA1958
1000_GenomesKIAA1958 
Exome Variant ServerKIAA1958
ExAC (Exome Aggregation Consortium)ENSG00000165185
GNOMAD BrowserENSG00000165185
Genetic variants : HAPMAP158405
Genomic Variants (DGV)KIAA1958 [DGVbeta]
DECIPHERKIAA1958 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKIAA1958 
Mutations
ICGC Data PortalKIAA1958 
TCGA Data PortalKIAA1958 
Broad Tumor PortalKIAA1958
OASIS PortalKIAA1958 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKIAA1958  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKIAA1958
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KIAA1958
DgiDB (Drug Gene Interaction Database)KIAA1958
DoCM (Curated mutations)KIAA1958 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KIAA1958 (select a term)
intoGenKIAA1958
Cancer3DKIAA1958(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617390   
Orphanet
DisGeNETKIAA1958
MedgenKIAA1958
Genetic Testing Registry KIAA1958
NextProtQ8N8K9 [Medical]
TSGene158405
GENETestsKIAA1958
Target ValidationKIAA1958
Huge Navigator KIAA1958 [HugePedia]
snp3D : Map Gene to Disease158405
BioCentury BCIQKIAA1958
ClinGenKIAA1958
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158405
Chemical/Pharm GKB GenePA134937806
Clinical trialKIAA1958
Miscellaneous
canSAR (ICR)KIAA1958 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKIAA1958
EVEXKIAA1958
GoPubMedKIAA1958
iHOPKIAA1958
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:19:55 CET 2017

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