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KIF13A (kinesin family member 13A)

Identity

Alias_symbol (synonym)bA500C11.2
Other aliasRBKIN
HGNC (Hugo) KIF13A
LocusID (NCBI) 63971
Atlas_Id 51469
Location 6p22.3  [Link to chromosome band 6p22]
Location_base_pair Starts at 17763693 and ends at 17987623 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BZW2 (7p21.1) / KIF13A (6p22.3)HEATR5B (2p22.2) / KIF13A (6p22.3)KIF13A (6p22.3) / KIF13A (6p22.3)
KIF13A (6p22.3) / PTPRK (6q22.33)KIF13A (6p22.3) / TPMT (6p22.3)TBC1D9B (5q35.3) / KIF13A (6p22.3)
TMEM94 (17q25.1) / KIF13A (6p22.3)KIF13A 6p22.3 / PTPRK 6q22.33KIF13A 6p22.3 / TPMT 6p22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  KIF13A/TPMT (6p22)
t(6;6)(p22;q22) KIF13A/PTPRK


External links

Nomenclature
HGNC (Hugo)KIF13A   14566
Cards
Entrez_Gene (NCBI)KIF13A  63971  kinesin family member 13A
AliasesRBKIN; bA500C11.2
GeneCards (Weizmann)KIF13A
Ensembl hg19 (Hinxton)ENSG00000137177 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137177 [Gene_View]  ENSG00000137177 [Sequence]  chr6:17763693-17987623 [Contig_View]  KIF13A [Vega]
ICGC DataPortalENSG00000137177
TCGA cBioPortalKIF13A
AceView (NCBI)KIF13A
Genatlas (Paris)KIF13A
WikiGenes63971
SOURCE (Princeton)KIF13A
Genetics Home Reference (NIH)KIF13A
Genomic and cartography
GoldenPath hg38 (UCSC)KIF13A  -     chr6:17763693-17987623 -  6p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KIF13A  -     6p22.3   [Description]    (hg19-Feb_2009)
EnsemblKIF13A - 6p22.3 [CytoView hg19]  KIF13A - 6p22.3 [CytoView hg38]
Mapping of homologs : NCBIKIF13A [Mapview hg19]  KIF13A [Mapview hg38]
OMIM605433   
Gene and transcription
Genbank (Entrez)AA037612 AI080622 AJ291578 AJ291579 AK025303
RefSeq transcript (Entrez)NM_001105566 NM_001105567 NM_001105568 NM_001243423 NM_022113
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KIF13A
Cluster EST : UnigeneHs.94499 [ NCBI ]
CGAP (NCI)Hs.94499
Alternative Splicing GalleryENSG00000137177
Gene ExpressionKIF13A [ NCBI-GEO ]   KIF13A [ EBI - ARRAY_EXPRESS ]   KIF13A [ SEEK ]   KIF13A [ MEM ]
Gene Expression Viewer (FireBrowse)KIF13A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63971
GTEX Portal (Tissue expression)KIF13A
Human Protein AtlasENSG00000137177-KIF13A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1H9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1H9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1H9
Splice isoforms : SwissVarQ9H1H9
PhosPhoSitePlusQ9H1H9
Domaine pattern : Prosite (Expaxy)KINESIN_MOTOR_1 (PS00411)    KINESIN_MOTOR_2 (PS50067)   
Domains : Interpro (EBI)FHA_dom    KIF13A    Kinesin-like    Kinesin-like_fam    Kinesin-like_KIF1-typ    Kinesin_assoc    Kinesin_motor_CS    Kinesin_motor_dom    Kinesin_motor_dom_sf    P-loop_NTPase    SMAD_FHA_dom_sf   
Domain families : Pfam (Sanger)DUF3694 (PF12473)    FHA (PF00498)    KIF1B (PF12423)    Kinesin (PF00225)    Kinesin_assoc (PF16183)   
Domain families : Pfam (NCBI)pfam12473    pfam00498    pfam12423    pfam00225    pfam16183   
Domain families : Smart (EMBL)KISc (SM00129)  
Conserved Domain (NCBI)KIF13A
DMDM Disease mutations63971
Blocks (Seattle)KIF13A
SuperfamilyQ9H1H9
Human Protein Atlas [tissue]ENSG00000137177-KIF13A [tissue]
Peptide AtlasQ9H1H9
HPRD09256
IPIIPI00295487   IPI00218490   IPI00164861   IPI00807394   IPI00641629   IPI00967779   IPI00967988   IPI00966965   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1H9
IntAct (EBI)Q9H1H9
FunCoupENSG00000137177
BioGRIDKIF13A
STRING (EMBL)KIF13A
ZODIACKIF13A
Ontologies - Pathways
QuickGOQ9H1H9
Ontology : AmiGOmicrotubule motor activity  microtubule motor activity  protein binding  ATP binding  centrosome  kinesin complex  microtubule  intracellular protein transport  intracellular protein transport  microtubule-based movement  cell cycle  microtubule binding  endosome to lysosome transport  endosome membrane  ATPase activity  midbody  melanosome organization  regulation of cytokinesis  trans-Golgi network membrane  cargo loading into vesicle  Golgi to plasma membrane protein transport  cell division  plus-end-directed vesicle transport along microtubule  
Ontology : EGO-EBImicrotubule motor activity  microtubule motor activity  protein binding  ATP binding  centrosome  kinesin complex  microtubule  intracellular protein transport  intracellular protein transport  microtubule-based movement  cell cycle  microtubule binding  endosome to lysosome transport  endosome membrane  ATPase activity  midbody  melanosome organization  regulation of cytokinesis  trans-Golgi network membrane  cargo loading into vesicle  Golgi to plasma membrane protein transport  cell division  plus-end-directed vesicle transport along microtubule  
NDEx NetworkKIF13A
Atlas of Cancer Signalling NetworkKIF13A
Wikipedia pathwaysKIF13A
Orthology - Evolution
OrthoDB63971
GeneTree (enSembl)ENSG00000137177
Phylogenetic Trees/Animal Genes : TreeFamKIF13A
HOVERGENQ9H1H9
HOGENOMQ9H1H9
Homologs : HomoloGeneKIF13A
Homology/Alignments : Family Browser (UCSC)KIF13A
Gene fusions - Rearrangements
Fusion : MitelmanKIF13A/PTPRK [6p22.3/6q22.33]  
Fusion : MitelmanKIF13A/TPMT [6p22.3/6p22.3]  [t(6;6)(p22;p22)]  
Fusion PortalKIF13A 6p22.3 PTPRK 6q22.33 LUAD
Fusion PortalKIF13A 6p22.3 TPMT 6p22.3 BRCA
Fusion : QuiverKIF13A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKIF13A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIF13A
dbVarKIF13A
ClinVarKIF13A
1000_GenomesKIF13A 
Exome Variant ServerKIF13A
ExAC (Exome Aggregation Consortium)ENSG00000137177
GNOMAD BrowserENSG00000137177
Varsome BrowserKIF13A
Genetic variants : HAPMAP63971
Genomic Variants (DGV)KIF13A [DGVbeta]
DECIPHERKIF13A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKIF13A 
Mutations
ICGC Data PortalKIF13A 
TCGA Data PortalKIF13A 
Broad Tumor PortalKIF13A
OASIS PortalKIF13A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKIF13A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKIF13A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KIF13A
DgiDB (Drug Gene Interaction Database)KIF13A
DoCM (Curated mutations)KIF13A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KIF13A (select a term)
intoGenKIF13A
Cancer3DKIF13A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605433   
Orphanet
DisGeNETKIF13A
MedgenKIF13A
Genetic Testing Registry KIF13A
NextProtQ9H1H9 [Medical]
TSGene63971
GENETestsKIF13A
Target ValidationKIF13A
Huge Navigator KIF13A [HugePedia]
snp3D : Map Gene to Disease63971
BioCentury BCIQKIF13A
ClinGenKIF13A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63971
Chemical/Pharm GKB GenePA30098
Clinical trialKIF13A
Miscellaneous
canSAR (ICR)KIF13A (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKIF13A
EVEXKIF13A
GoPubMedKIF13A
iHOPKIF13A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:14:57 CET 2018

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