Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KIF13B (kinesin family member 13B)

Identity

Alias_symbol (synonym)GAKIN
KIAA0639
Other alias
HGNC (Hugo) KIF13B
LocusID (NCBI) 23303
Atlas_Id 64911
Location 8p12  [Link to chromosome band 8p12]
Location_base_pair Starts at 29067278 and ends at 29263093 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KIF13B (8p12) / CHD2 (15q26.1)KIF13B (8p12) / EPN2 (17p11.2)KIF13B (8p12) / FLOT1 (6p21.33)
KIF13B (8p12) / HNRNPA2B1 (7p15.2)KIF13B (8p12) / PNOC (8p21.1)KIF13B (8p12) / SARAF (8p12)
KIF13B (8p12) / TENM4 (11q14.1)KIF13B (8p12) / TRAP1 (16p13.3)NFIB (9p23) / KIF13B (8p12)
PPM1H (12q14.1) / KIF13B (8p12)SAFB (19p13.3) / KIF13B (8p12)KIF13B ODZ4
KIF13B TMEM66KIF13B EPN2KIF13B PNOC

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KIF13B   14405
Cards
Entrez_Gene (NCBI)KIF13B  23303  kinesin family member 13B
AliasesGAKIN
GeneCards (Weizmann)KIF13B
Ensembl hg19 (Hinxton)ENSG00000197892 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197892 [Gene_View]  chr8:29067278-29263093 [Contig_View]  KIF13B [Vega]
ICGC DataPortalENSG00000197892
TCGA cBioPortalKIF13B
AceView (NCBI)KIF13B
Genatlas (Paris)KIF13B
WikiGenes23303
SOURCE (Princeton)KIF13B
Genetics Home Reference (NIH)KIF13B
Genomic and cartography
GoldenPath hg38 (UCSC)KIF13B  -     chr8:29067278-29263093 -  8p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KIF13B  -     8p12   [Description]    (hg19-Feb_2009)
EnsemblKIF13B - 8p12 [CytoView hg19]  KIF13B - 8p12 [CytoView hg38]
Mapping of homologs : NCBIKIF13B [Mapview hg19]  KIF13B [Mapview hg38]
OMIM607350   
Gene and transcription
Genbank (Entrez)AB014539 AF279865 AI760125 AK000240 AK129580
RefSeq transcript (Entrez)NM_015254
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KIF13B
Cluster EST : UnigeneHs.444767 [ NCBI ]
CGAP (NCI)Hs.444767
Alternative Splicing GalleryENSG00000197892
Gene ExpressionKIF13B [ NCBI-GEO ]   KIF13B [ EBI - ARRAY_EXPRESS ]   KIF13B [ SEEK ]   KIF13B [ MEM ]
Gene Expression Viewer (FireBrowse)KIF13B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23303
GTEX Portal (Tissue expression)KIF13B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQT8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQT8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQT8
Splice isoforms : SwissVarQ9NQT8
PhosPhoSitePlusQ9NQT8
Domaine pattern : Prosite (Expaxy)CAP_GLY_1 (PS00845)    CAP_GLY_2 (PS50245)    KINESIN_MOTOR_1 (PS00411)    KINESIN_MOTOR_2 (PS50067)   
Domains : Interpro (EBI)CAP-Gly_domain    FHA_dom    KIF13    Kinesin-like    Kinesin-like_KIF1-typ    Kinesin_assoc    Kinesin_motor_CS    Kinesin_motor_dom    P-loop_NTPase    SMAD_FHA_domain   
Domain families : Pfam (Sanger)CAP_GLY (PF01302)    DUF3694 (PF12473)    FHA (PF00498)    KIF1B (PF12423)    Kinesin (PF00225)    Kinesin_assoc (PF16183)   
Domain families : Pfam (NCBI)pfam01302    pfam12473    pfam00498    pfam12423    pfam00225    pfam16183   
Domain families : Smart (EMBL)CAP_GLY (SM01052)  KISc (SM00129)  
Conserved Domain (NCBI)KIF13B
DMDM Disease mutations23303
Blocks (Seattle)KIF13B
PDB (SRS)2COW    3FM8    3GBJ    3MDB   
PDB (PDBSum)2COW    3FM8    3GBJ    3MDB   
PDB (IMB)2COW    3FM8    3GBJ    3MDB   
PDB (RSDB)2COW    3FM8    3GBJ    3MDB   
Structural Biology KnowledgeBase2COW    3FM8    3GBJ    3MDB   
SCOP (Structural Classification of Proteins)2COW    3FM8    3GBJ    3MDB   
CATH (Classification of proteins structures)2COW    3FM8    3GBJ    3MDB   
SuperfamilyQ9NQT8
Human Protein AtlasENSG00000197892
Peptide AtlasQ9NQT8
HPRD09556
IPIIPI00021753   IPI00910201   IPI00982305   IPI00978452   IPI00974226   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQT8
IntAct (EBI)Q9NQT8
FunCoupENSG00000197892
BioGRIDKIF13B
STRING (EMBL)KIF13B
ZODIACKIF13B
Ontologies - Pathways
QuickGOQ9NQT8
Ontology : AmiGOmicrotubule motor activity  microtubule motor activity  protein binding  ATP binding  cytoplasm  cytosol  kinesin complex  microtubule  microvillus  protein targeting  microtubule-based movement  signal transduction  microtubule binding  ATPase activity  protein kinase binding  axon  cytoskeleton-dependent intracellular transport  paranode region of axon  T cell activation  regulation of axonogenesis  14-3-3 protein binding  plus-end-directed vesicle transport along microtubule  
Ontology : EGO-EBImicrotubule motor activity  microtubule motor activity  protein binding  ATP binding  cytoplasm  cytosol  kinesin complex  microtubule  microvillus  protein targeting  microtubule-based movement  signal transduction  microtubule binding  ATPase activity  protein kinase binding  axon  cytoskeleton-dependent intracellular transport  paranode region of axon  T cell activation  regulation of axonogenesis  14-3-3 protein binding  plus-end-directed vesicle transport along microtubule  
NDEx NetworkKIF13B
Atlas of Cancer Signalling NetworkKIF13B
Wikipedia pathwaysKIF13B
Orthology - Evolution
OrthoDB23303
GeneTree (enSembl)ENSG00000197892
Phylogenetic Trees/Animal Genes : TreeFamKIF13B
HOVERGENQ9NQT8
HOGENOMQ9NQT8
Homologs : HomoloGeneKIF13B
Homology/Alignments : Family Browser (UCSC)KIF13B
Gene fusions - Rearrangements
Fusion: TCGAKIF13B ODZ4
Fusion: TCGAKIF13B TMEM66
Fusion: TCGAKIF13B EPN2
Fusion: TCGAKIF13B PNOC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKIF13B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIF13B
dbVarKIF13B
ClinVarKIF13B
1000_GenomesKIF13B 
Exome Variant ServerKIF13B
ExAC (Exome Aggregation Consortium)KIF13B (select the gene name)
Genetic variants : HAPMAP23303
Genomic Variants (DGV)KIF13B [DGVbeta]
DECIPHERKIF13B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKIF13B 
Mutations
ICGC Data PortalKIF13B 
TCGA Data PortalKIF13B 
Broad Tumor PortalKIF13B
OASIS PortalKIF13B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKIF13B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKIF13B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KIF13B
DgiDB (Drug Gene Interaction Database)KIF13B
DoCM (Curated mutations)KIF13B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KIF13B (select a term)
intoGenKIF13B
Cancer3DKIF13B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607350   
Orphanet
MedgenKIF13B
Genetic Testing Registry KIF13B
NextProtQ9NQT8 [Medical]
TSGene23303
GENETestsKIF13B
Target ValidationKIF13B
Huge Navigator KIF13B [HugePedia]
snp3D : Map Gene to Disease23303
BioCentury BCIQKIF13B
ClinGenKIF13B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23303
Chemical/Pharm GKB GenePA30099
Clinical trialKIF13B
Miscellaneous
canSAR (ICR)KIF13B (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKIF13B
EVEXKIF13B
GoPubMedKIF13B
iHOPKIF13B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:54:36 CEST 2017

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