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KIF25-AS1 (KIF25 antisense RNA 1)

Identity

Alias_namesC6orf54
NCRNA00300
chromosome 6 open reading frame 54
non-protein coding RNA 300
KIF25 antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)HGC6.1.1
Other alias
HGNC (Hugo) KIF25-AS1
LocusID (NCBI) 100505879
Atlas_Id 64922
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 168393504 and ends at 168397757 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KIF25-AS1 (6q27) / LMNA (1q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KIF25-AS1   20953
Cards
Entrez_Gene (NCBI)KIF25-AS1  100505879  KIF25 antisense RNA 1
AliasesC6orf54; HGC6.1.1; NCRNA00300
GeneCards (Weizmann)KIF25-AS1
Ensembl hg19 (Hinxton)ENSG00000229921 [Gene_View]  chr6:168393504-168397757 [Contig_View]  KIF25-AS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000229921 [Gene_View]  chr6:168393504-168397757 [Contig_View]  KIF25-AS1 [Vega]
ICGC DataPortalENSG00000229921
TCGA cBioPortalKIF25-AS1
AceView (NCBI)KIF25-AS1
Genatlas (Paris)KIF25-AS1
WikiGenes100505879
SOURCE (Princeton)KIF25-AS1
Genetics Home Reference (NIH)KIF25-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)KIF25-AS1  -     chr6:168393504-168397757 -  6q27   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KIF25-AS1  -     6q27   [Description]    (hg38-Dec_2013)
EnsemblKIF25-AS1 - 6q27 [CytoView hg19]  KIF25-AS1 - 6q27 [CytoView hg38]
Mapping of homologs : NCBIKIF25-AS1 [Mapview hg19]  KIF25-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB016899 AB016900 BC112215 BC143766 HG499885
RefSeq transcript (Entrez)NM_014354
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_025741 NW_004929328
Consensus coding sequences : CCDS (NCBI)KIF25-AS1
Cluster EST : UnigeneHs.225962 [ NCBI ]
CGAP (NCI)Hs.225962
Alternative Splicing GalleryENSG00000229921
Gene ExpressionKIF25-AS1 [ NCBI-GEO ]   KIF25-AS1 [ EBI - ARRAY_EXPRESS ]   KIF25-AS1 [ SEEK ]   KIF25-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)KIF25-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100505879
GTEX Portal (Tissue expression)KIF25-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6Z4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6Z4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6Z4
Splice isoforms : SwissVarQ9Y6Z4
PhosPhoSitePlusQ9Y6Z4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KIF25-AS1
DMDM Disease mutations100505879
Blocks (Seattle)KIF25-AS1
SuperfamilyQ9Y6Z4
Human Protein AtlasENSG00000229921
Peptide AtlasQ9Y6Z4
IPIIPI00003859   IPI00301699   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6Z4
IntAct (EBI)Q9Y6Z4
FunCoupENSG00000229921
BioGRIDKIF25-AS1
STRING (EMBL)KIF25-AS1
ZODIACKIF25-AS1
Ontologies - Pathways
QuickGOQ9Y6Z4
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  
NDEx NetworkKIF25-AS1
Atlas of Cancer Signalling NetworkKIF25-AS1
Wikipedia pathwaysKIF25-AS1
Orthology - Evolution
OrthoDB100505879
GeneTree (enSembl)ENSG00000229921
Phylogenetic Trees/Animal Genes : TreeFamKIF25-AS1
HOVERGENQ9Y6Z4
HOGENOMQ9Y6Z4
Homologs : HomoloGeneKIF25-AS1
Homology/Alignments : Family Browser (UCSC)KIF25-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKIF25-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIF25-AS1
dbVarKIF25-AS1
ClinVarKIF25-AS1
1000_GenomesKIF25-AS1 
Exome Variant ServerKIF25-AS1
ExAC (Exome Aggregation Consortium)KIF25-AS1 (select the gene name)
Genetic variants : HAPMAP100505879
Genomic Variants (DGV)KIF25-AS1 [DGVbeta]
DECIPHER (Syndromes)6:168393504-168397757  ENSG00000229921
CONAN: Copy Number AnalysisKIF25-AS1 
Mutations
ICGC Data PortalKIF25-AS1 
TCGA Data PortalKIF25-AS1 
Broad Tumor PortalKIF25-AS1
OASIS PortalKIF25-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDKIF25-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KIF25-AS1
DgiDB (Drug Gene Interaction Database)KIF25-AS1
DoCM (Curated mutations)KIF25-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KIF25-AS1 (select a term)
intoGenKIF25-AS1
Cancer3DKIF25-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKIF25-AS1
Genetic Testing Registry KIF25-AS1
NextProtQ9Y6Z4 [Medical]
TSGene100505879
GENETestsKIF25-AS1
Huge Navigator KIF25-AS1 [HugePedia]
snp3D : Map Gene to Disease100505879
BioCentury BCIQKIF25-AS1
ClinGenKIF25-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505879
Clinical trialKIF25-AS1
Miscellaneous
canSAR (ICR)KIF25-AS1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKIF25-AS1
EVEXKIF25-AS1
GoPubMedKIF25-AS1
iHOPKIF25-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:53 CET 2017

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