Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KIF3C (kinesin family member 3C)

Identity

Other alias-
HGNC (Hugo) KIF3C
LocusID (NCBI) 3797
Atlas_Id 55551
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 25926586 and ends at 25982574 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ASXL2 (2p23.3) / KIF3C (2p23.3)KIF3C (2p23.3) / GIT1 (17q11.2)KIF3C (2p23.3) / KIF3C (2p23.3)
KIF3C (2p23.3) / RBKS (2p23.2)KIF3C (2p23.3) / SGK1 (6q23.2)KIF5C (2q23.1) / KIF3C (2p23.3)
MDFI (6p21.1) / KIF3C (2p23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KIF3C   6321
Cards
Entrez_Gene (NCBI)KIF3C  3797  kinesin family member 3C
Aliases
GeneCards (Weizmann)KIF3C
Ensembl hg19 (Hinxton)ENSG00000084731 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000084731 [Gene_View]  chr2:25926586-25982574 [Contig_View]  KIF3C [Vega]
ICGC DataPortalENSG00000084731
TCGA cBioPortalKIF3C
AceView (NCBI)KIF3C
Genatlas (Paris)KIF3C
WikiGenes3797
SOURCE (Princeton)KIF3C
Genetics Home Reference (NIH)KIF3C
Genomic and cartography
GoldenPath hg38 (UCSC)KIF3C  -     chr2:25926586-25982574 -  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KIF3C  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblKIF3C - 2p23.3 [CytoView hg19]  KIF3C - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBIKIF3C [Mapview hg19]  KIF3C [Mapview hg38]
OMIM602845   
Gene and transcription
Genbank (Entrez)AF018164 AF035621 AK293738 AK315324 BC018932
RefSeq transcript (Entrez)NM_002254
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KIF3C
Cluster EST : UnigeneHs.21611 [ NCBI ]
CGAP (NCI)Hs.21611
Alternative Splicing GalleryENSG00000084731
Gene ExpressionKIF3C [ NCBI-GEO ]   KIF3C [ EBI - ARRAY_EXPRESS ]   KIF3C [ SEEK ]   KIF3C [ MEM ]
Gene Expression Viewer (FireBrowse)KIF3C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3797
GTEX Portal (Tissue expression)KIF3C
Human Protein AtlasENSG00000084731-KIF3C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14782   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14782  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14782
Splice isoforms : SwissVarO14782
PhosPhoSitePlusO14782
Domaine pattern : Prosite (Expaxy)KINESIN_MOTOR_1 (PS00411)    KINESIN_MOTOR_2 (PS50067)   
Domains : Interpro (EBI)Kinesin_motor_CS    Kinesin_motor_dom    P-loop_NTPase   
Domain families : Pfam (Sanger)Kinesin (PF00225)   
Domain families : Pfam (NCBI)pfam00225   
Domain families : Smart (EMBL)KISc (SM00129)  
Conserved Domain (NCBI)KIF3C
DMDM Disease mutations3797
Blocks (Seattle)KIF3C
PDB (SRS)3B6V   
PDB (PDBSum)3B6V   
PDB (IMB)3B6V   
PDB (RSDB)3B6V   
Structural Biology KnowledgeBase3B6V   
SCOP (Structural Classification of Proteins)3B6V   
CATH (Classification of proteins structures)3B6V   
SuperfamilyO14782
Human Protein Atlas [tissue]ENSG00000084731-KIF3C [tissue]
Peptide AtlasO14782
HPRD04164
IPIIPI00023727   IPI01010372   IPI00894315   IPI00894449   
Protein Interaction databases
DIP (DOE-UCLA)O14782
IntAct (EBI)O14782
FunCoupENSG00000084731
BioGRIDKIF3C
STRING (EMBL)KIF3C
ZODIACKIF3C
Ontologies - Pathways
QuickGOO14782
Ontology : AmiGOmotor activity  microtubule motor activity  ATP binding  cytosol  kinesin complex  microtubule  cilium  retrograde vesicle-mediated transport, Golgi to ER  microtubule-based movement  microtubule-based movement  microtubule binding  ATPase activity  antigen processing and presentation of exogenous peptide antigen via MHC class II  intraciliary transport involved in cilium assembly  organelle transport along microtubule  ciliary tip  
Ontology : EGO-EBImotor activity  microtubule motor activity  ATP binding  cytosol  kinesin complex  microtubule  cilium  retrograde vesicle-mediated transport, Golgi to ER  microtubule-based movement  microtubule-based movement  microtubule binding  ATPase activity  antigen processing and presentation of exogenous peptide antigen via MHC class II  intraciliary transport involved in cilium assembly  organelle transport along microtubule  ciliary tip  
NDEx NetworkKIF3C
Atlas of Cancer Signalling NetworkKIF3C
Wikipedia pathwaysKIF3C
Orthology - Evolution
OrthoDB3797
GeneTree (enSembl)ENSG00000084731
Phylogenetic Trees/Animal Genes : TreeFamKIF3C
HOVERGENO14782
HOGENOMO14782
Homologs : HomoloGeneKIF3C
Homology/Alignments : Family Browser (UCSC)KIF3C
Gene fusions - Rearrangements
Tumor Fusion PortalKIF3C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKIF3C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIF3C
dbVarKIF3C
ClinVarKIF3C
1000_GenomesKIF3C 
Exome Variant ServerKIF3C
ExAC (Exome Aggregation Consortium)ENSG00000084731
GNOMAD BrowserENSG00000084731
Genetic variants : HAPMAP3797
Genomic Variants (DGV)KIF3C [DGVbeta]
DECIPHERKIF3C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKIF3C 
Mutations
ICGC Data PortalKIF3C 
TCGA Data PortalKIF3C 
Broad Tumor PortalKIF3C
OASIS PortalKIF3C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKIF3C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKIF3C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KIF3C
DgiDB (Drug Gene Interaction Database)KIF3C
DoCM (Curated mutations)KIF3C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KIF3C (select a term)
intoGenKIF3C
Cancer3DKIF3C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602845   
Orphanet
DisGeNETKIF3C
MedgenKIF3C
Genetic Testing Registry KIF3C
NextProtO14782 [Medical]
TSGene3797
GENETestsKIF3C
Target ValidationKIF3C
Huge Navigator KIF3C [HugePedia]
snp3D : Map Gene to Disease3797
BioCentury BCIQKIF3C
ClinGenKIF3C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3797
Chemical/Pharm GKB GenePA30104
Clinical trialKIF3C
Miscellaneous
canSAR (ICR)KIF3C (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKIF3C
EVEXKIF3C
GoPubMedKIF3C
iHOPKIF3C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:18:56 CET 2017

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