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KIFC1 (kinesin family member C1)

Identity

Alias_namesKNSL2
kinesin-like 2
Alias_symbol (synonym)HSET
Other alias
HGNC (Hugo) KIFC1
LocusID (NCBI) 3833
Atlas_Id 50878
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 33391536 and ends at 33409922 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABHD12B (14q22.1) / KIFC1 (6p21.32)TRA2B (3q27.2) / KIFC1 (6p21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KIFC1   6389
Cards
Entrez_Gene (NCBI)KIFC1  3833  kinesin family member C1
AliasesHSET; KNSL2
GeneCards (Weizmann)KIFC1
Ensembl hg19 (Hinxton)ENSG00000237649 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237649 [Gene_View]  ENSG00000237649 [Sequence]  chr6:33391536-33409922 [Contig_View]  KIFC1 [Vega]
ICGC DataPortalENSG00000237649
TCGA cBioPortalKIFC1
AceView (NCBI)KIFC1
Genatlas (Paris)KIFC1
WikiGenes3833
SOURCE (Princeton)KIFC1
Genetics Home Reference (NIH)KIFC1
Genomic and cartography
GoldenPath hg38 (UCSC)KIFC1  -     chr6:33391536-33409922 +  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KIFC1  -     6p21.32   [Description]    (hg19-Feb_2009)
EnsemblKIFC1 - 6p21.32 [CytoView hg19]  KIFC1 - 6p21.32 [CytoView hg38]
Mapping of homologs : NCBIKIFC1 [Mapview hg19]  KIFC1 [Mapview hg38]
OMIM603763   
Gene and transcription
Genbank (Entrez)AI990093 AJ010479 AK297378 AK303239 BC000712
RefSeq transcript (Entrez)NM_002263
RefSeq genomic (Entrez)NC_000006 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)KIFC1
Cluster EST : UnigeneHs.436912 [ NCBI ]
CGAP (NCI)Hs.436912
Alternative Splicing GalleryENSG00000237649
Gene ExpressionKIFC1 [ NCBI-GEO ]   KIFC1 [ EBI - ARRAY_EXPRESS ]   KIFC1 [ SEEK ]   KIFC1 [ MEM ]
Gene Expression Viewer (FireBrowse)KIFC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3833
GTEX Portal (Tissue expression)KIFC1
Human Protein AtlasENSG00000237649-KIFC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BW19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BW19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BW19
Splice isoforms : SwissVarQ9BW19
PhosPhoSitePlusQ9BW19
Domaine pattern : Prosite (Expaxy)KINESIN_MOTOR_1 (PS00411)    KINESIN_MOTOR_2 (PS50067)   
Domains : Interpro (EBI)Kinesin-like_fam    Kinesin_motor_CS    Kinesin_motor_dom    Kinesin_motor_dom_sf    P-loop_NTPase   
Domain families : Pfam (Sanger)Kinesin (PF00225)   
Domain families : Pfam (NCBI)pfam00225   
Domain families : Smart (EMBL)KISc (SM00129)  
Conserved Domain (NCBI)KIFC1
DMDM Disease mutations3833
Blocks (Seattle)KIFC1
PDB (SRS)5WDH   
PDB (PDBSum)5WDH   
PDB (IMB)5WDH   
PDB (RSDB)5WDH   
Structural Biology KnowledgeBase5WDH   
SCOP (Structural Classification of Proteins)5WDH   
CATH (Classification of proteins structures)5WDH   
SuperfamilyQ9BW19
Human Protein Atlas [tissue]ENSG00000237649-KIFC1 [tissue]
Peptide AtlasQ9BW19
IPIIPI00306400   IPI00791530   IPI00853466   
Protein Interaction databases
DIP (DOE-UCLA)Q9BW19
IntAct (EBI)Q9BW19
FunCoupENSG00000237649
BioGRIDKIFC1
STRING (EMBL)KIFC1
ZODIACKIFC1
Ontologies - Pathways
QuickGOQ9BW19
Ontology : AmiGOmitotic sister chromatid segregation  microtubule motor activity  microtubule motor activity  ATP binding  nucleus  early endosome  microtubule organizing center  kinesin complex  microtubule  microtubule-based movement  mitotic metaphase plate congression  spermatogenesis  microtubule binding  membrane  ATPase activity  cell division  mitotic spindle  mitotic spindle assembly  mitotic spindle assembly  
Ontology : EGO-EBImitotic sister chromatid segregation  microtubule motor activity  microtubule motor activity  ATP binding  nucleus  early endosome  microtubule organizing center  kinesin complex  microtubule  microtubule-based movement  mitotic metaphase plate congression  spermatogenesis  microtubule binding  membrane  ATPase activity  cell division  mitotic spindle  mitotic spindle assembly  mitotic spindle assembly  
NDEx NetworkKIFC1
Atlas of Cancer Signalling NetworkKIFC1
Wikipedia pathwaysKIFC1
Orthology - Evolution
OrthoDB3833
GeneTree (enSembl)ENSG00000237649
Phylogenetic Trees/Animal Genes : TreeFamKIFC1
HOVERGENQ9BW19
HOGENOMQ9BW19
Homologs : HomoloGeneKIFC1
Homology/Alignments : Family Browser (UCSC)KIFC1
Gene fusions - Rearrangements
Fusion : QuiverKIFC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKIFC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIFC1
dbVarKIFC1
ClinVarKIFC1
1000_GenomesKIFC1 
Exome Variant ServerKIFC1
ExAC (Exome Aggregation Consortium)ENSG00000237649
GNOMAD BrowserENSG00000237649
Varsome BrowserKIFC1
Genetic variants : HAPMAP3833
Genomic Variants (DGV)KIFC1 [DGVbeta]
DECIPHERKIFC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKIFC1 
Mutations
ICGC Data PortalKIFC1 
TCGA Data PortalKIFC1 
Broad Tumor PortalKIFC1
OASIS PortalKIFC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKIFC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKIFC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KIFC1
DgiDB (Drug Gene Interaction Database)KIFC1
DoCM (Curated mutations)KIFC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KIFC1 (select a term)
intoGenKIFC1
Cancer3DKIFC1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603763   
Orphanet
DisGeNETKIFC1
MedgenKIFC1
Genetic Testing Registry KIFC1
NextProtQ9BW19 [Medical]
TSGene3833
GENETestsKIFC1
Target ValidationKIFC1
Huge Navigator KIFC1 [HugePedia]
snp3D : Map Gene to Disease3833
BioCentury BCIQKIFC1
ClinGenKIFC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3833
Chemical/Pharm GKB GenePA30178
Clinical trialKIFC1
Miscellaneous
canSAR (ICR)KIFC1 (select the gene name)
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKIFC1
EVEXKIFC1
GoPubMedKIFC1
iHOPKIFC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:15:05 CET 2018

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