Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KIFC3 (kinesin family member C3)

Identity

HGNC (Hugo) KIFC3
LocusID (NCBI) 3801
Atlas_Id 51312
Location 16q21
Location_base_pair Starts at 57792129 and ends at 57831929 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KIFC3   6326
Cards
Entrez_Gene (NCBI)KIFC3  3801  kinesin family member C3
GeneCards (Weizmann)KIFC3
Ensembl hg19 (Hinxton)ENSG00000140859 [Gene_View]  chr16:57792129-57831929 [Contig_View]  KIFC3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000140859 [Gene_View]  chr16:57792129-57831929 [Contig_View]  KIFC3 [Vega]
ICGC DataPortalENSG00000140859
TCGA cBioPortalKIFC3
AceView (NCBI)KIFC3
Genatlas (Paris)KIFC3
WikiGenes3801
SOURCE (Princeton)KIFC3
Genomic and cartography
GoldenPath hg19 (UCSC)KIFC3  -     chr16:57792129-57831929 -  16q21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KIFC3  -     16q21   [Description]    (hg38-Dec_2013)
EnsemblKIFC3 - 16q21 [CytoView hg19]  KIFC3 - 16q21 [CytoView hg38]
Mapping of homologs : NCBIKIFC3 [Mapview hg19]  KIFC3 [Mapview hg38]
OMIM604535   
Gene and transcription
Genbank (Entrez)AB209290 AF004426 AK091891 AK092013 AK291737
RefSeq transcript (Entrez)NM_001130099 NM_001130100 NM_005550
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)KIFC3
Cluster EST : UnigeneHs.23131 [ NCBI ]
CGAP (NCI)Hs.23131
Alternative Splicing : Fast-db (Paris)GSHG0011874
Alternative Splicing GalleryENSG00000140859
Gene ExpressionKIFC3 [ NCBI-GEO ]     KIFC3 [ SEEK ]   KIFC3 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVG8 (Uniprot)
NextProtQ9BVG8  [Medical]  [Publications]
With graphics : InterProQ9BVG8
Splice isoforms : SwissVarQ9BVG8 (Swissvar)
Domaine pattern : Prosite (Expaxy)KINESIN_MOTOR_1 (PS00411)    KINESIN_MOTOR_2 (PS50067)   
Domains : Interpro (EBI)Kinesin-like_fam    Kinesin_motor_CS    Kinesin_motor_dom    P-loop_NTPase   
Related proteins : CluSTrQ9BVG8
Domain families : Pfam (Sanger)Kinesin (PF00225)   
Domain families : Pfam (NCBI)pfam00225   
Domain families : Smart (EMBL)KISc (SM00129)  
DMDM Disease mutations3801
Blocks (Seattle)Q9BVG8
PDB (SRS)2H58   
PDB (PDBSum)2H58   
PDB (IMB)2H58   
PDB (RSDB)2H58   
Human Protein AtlasENSG00000140859
Peptide AtlasQ9BVG8
HPRD05171
IPIIPI00909341   IPI00151119   IPI01013951   IPI01011828   IPI01010998   IPI00867631   IPI01015611   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVG8
IntAct (EBI)Q9BVG8
FunCoupENSG00000140859
BioGRIDKIFC3
IntegromeDBKIFC3
STRING (EMBL)KIFC3
Ontologies - Pathways
QuickGOQ9BVG8
Ontology : AmiGOmicrotubule motor activity  protein binding  ATP binding  Golgi apparatus  centrosome  kinesin complex  microtubule  zonula adherens  microtubule-based movement  Golgi organization  visual perception  microtubule binding  metabolic process  metabolic process  metabolic process  ATPase activity  cytoplasmic vesicle membrane  zonula adherens maintenance  extracellular exosome  epithelial cell-cell adhesion  
Ontology : EGO-EBImicrotubule motor activity  protein binding  ATP binding  Golgi apparatus  centrosome  kinesin complex  microtubule  zonula adherens  microtubule-based movement  Golgi organization  visual perception  microtubule binding  metabolic process  metabolic process  metabolic process  ATPase activity  cytoplasmic vesicle membrane  zonula adherens maintenance  extracellular exosome  epithelial cell-cell adhesion  
Protein Interaction DatabaseKIFC3
DoCM (Curated mutations)KIFC3
Wikipedia pathwaysKIFC3
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerKIFC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIFC3
dbVarKIFC3
ClinVarKIFC3
1000_GenomesKIFC3 
Exome Variant ServerKIFC3
SNP (GeneSNP Utah)KIFC3
SNP : HGBaseKIFC3
Genetic variants : HAPMAPKIFC3
Genomic Variants (DGV)KIFC3 [DGVbeta]
Mutations
ICGC Data PortalKIFC3 
TCGA Data PortalKIFC3 
Tumor PortalKIFC3
Somatic Mutations in Cancer : COSMICKIFC3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)16:57792129-57831929
CONAN: Copy Number AnalysisKIFC3 
Mutations and Diseases : HGMDKIFC3
OMIM604535   
MedgenKIFC3
NextProtQ9BVG8 [Medical]
GENETestsKIFC3
Disease Genetic AssociationKIFC3
Huge Navigator KIFC3 [HugePedia]  KIFC3 [HugeCancerGEM]
snp3D : Map Gene to Disease3801
DGIdb (Drug Gene Interaction db)KIFC3
BioCentury BCIQKIFC3
General knowledge
Homologs : HomoloGeneKIFC3
Homology/Alignments : Family Browser (UCSC)KIFC3
Phylogenetic Trees/Animal Genes : TreeFamKIFC3
Chemical/Protein Interactions : CTD3801
Chemical/Pharm GKB GenePA30112
Clinical trialKIFC3
Cancer Resource (Charite)ENSG00000140859
Other databases
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
CoreMineKIFC3
GoPubMedKIFC3
iHOPKIFC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jun 27 11:45:52 CEST 2015

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.