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KIRREL2 (kin of IRRE like 2 (Drosophila))

Identity

Alias_symbol (synonym)NLG1
NEPH3
FILTRIN
DKFZp564A1164
MGC15718
Other alias
HGNC (Hugo) KIRREL2
LocusID (NCBI) 84063
Atlas_Id 64938
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 35856908 and ends at 35867146 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MAPK8 (10q11.22) / KIRREL2 (19q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KIRREL2   18816
Cards
Entrez_Gene (NCBI)KIRREL2  84063  kin of IRRE like 2 (Drosophila)
AliasesFILTRIN; NEPH3; NLG1
GeneCards (Weizmann)KIRREL2
Ensembl hg19 (Hinxton)ENSG00000126259 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126259 [Gene_View]  chr19:35856908-35867146 [Contig_View]  KIRREL2 [Vega]
ICGC DataPortalENSG00000126259
TCGA cBioPortalKIRREL2
AceView (NCBI)KIRREL2
Genatlas (Paris)KIRREL2
WikiGenes84063
SOURCE (Princeton)KIRREL2
Genetics Home Reference (NIH)KIRREL2
Genomic and cartography
GoldenPath hg38 (UCSC)KIRREL2  -     chr19:35856908-35867146 +  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KIRREL2  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblKIRREL2 - 19q13.12 [CytoView hg19]  KIRREL2 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIKIRREL2 [Mapview hg19]  KIRREL2 [Mapview hg38]
OMIM607762   
Gene and transcription
Genbank (Entrez)AB593116 AK307865 AL136654 AL529115 AY305301
RefSeq transcript (Entrez)NM_001329530 NM_032123 NM_199179 NM_199180
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KIRREL2
Cluster EST : UnigeneHs.145729 [ NCBI ]
CGAP (NCI)Hs.145729
Alternative Splicing GalleryENSG00000126259
Gene ExpressionKIRREL2 [ NCBI-GEO ]   KIRREL2 [ EBI - ARRAY_EXPRESS ]   KIRREL2 [ SEEK ]   KIRREL2 [ MEM ]
Gene Expression Viewer (FireBrowse)KIRREL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84063
GTEX Portal (Tissue expression)KIRREL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWL6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWL6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWL6
Splice isoforms : SwissVarQ6UWL6
PhosPhoSitePlusQ6UWL6
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)CD80_C2-set    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)C2-set_2 (PF08205)    I-set (PF07679)   
Domain families : Pfam (NCBI)pfam08205    pfam07679   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)KIRREL2
DMDM Disease mutations84063
Blocks (Seattle)KIRREL2
SuperfamilyQ6UWL6
Human Protein AtlasENSG00000126259
Peptide AtlasQ6UWL6
HPRD08473
IPIIPI00395833   IPI00470458   IPI00395832   IPI00439945   IPI00063735   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWL6
IntAct (EBI)Q6UWL6
FunCoupENSG00000126259
BioGRIDKIRREL2
STRING (EMBL)KIRREL2
ZODIACKIRREL2
Ontologies - Pathways
QuickGOQ6UWL6
Ontology : AmiGOnegative regulation of protein phosphorylation  protein binding  plasma membrane  cell adhesion  integral component of membrane  single organismal cell-cell adhesion  slit diaphragm  
Ontology : EGO-EBInegative regulation of protein phosphorylation  protein binding  plasma membrane  cell adhesion  integral component of membrane  single organismal cell-cell adhesion  slit diaphragm  
NDEx NetworkKIRREL2
Atlas of Cancer Signalling NetworkKIRREL2
Wikipedia pathwaysKIRREL2
Orthology - Evolution
OrthoDB84063
GeneTree (enSembl)ENSG00000126259
Phylogenetic Trees/Animal Genes : TreeFamKIRREL2
HOVERGENQ6UWL6
HOGENOMQ6UWL6
Homologs : HomoloGeneKIRREL2
Homology/Alignments : Family Browser (UCSC)KIRREL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKIRREL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIRREL2
dbVarKIRREL2
ClinVarKIRREL2
1000_GenomesKIRREL2&nfsP;
Exome Variant ServerKIRREL2
ExAC (Exome Aggregation Consortium)KIRREL2 (select the gene name)
Genetic variants : HAPMAP84063
Genomic Variants (DGV)KIRREL2 [DGVbeta]
DECIPHERKIRREL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKIRREL2 
Mutations
ICGC Data PortalKIRREL2 
TCGA Data PortalKIRREL2 
Broad Tumor PortalKIRREL2
OASIS PortalKIRREL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKIRREL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKIRREL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KIRREL2
DgiDB (Drug Gene Interaction Database)KIRREL2
DoCM (Curated mutations)KIRREL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KIRREL2 (select a term)
intoGenKIRREL2
Cancer3DKIRREL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607762   
Orphanet
MedgenKIRREL2
Genetic Testing Registry KIRREL2
NextProtQ6UWL6 [Medical]
TSGene84063
GENETestsKIRREL2
Target ValidationKIRREL2
Huge Navigator KIRREL2 [HugePedia]
snp3D : Map Gene to Disease84063
BioCentury BCIQKIRREL2
ClinGenKIRREL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84063
Chemical/Pharm GKB GenePA38693
Clinical trialKIRREL2
Miscellaneous
canSAR (ICR)KIRREL2 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKIRREL2
EVEXKIRREL2
GoPubMedKIRREL2
iHOPKIRREL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:58 CEST 2017

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