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KIRREL3-AS3 (KIRREL3 antisense RNA 3)

Identity

Alias_namesPRR10
NCRNA00288
proline rich 10
non-protein coding RNA 288
KIRREL3 antisense RNA 3 (non-protein coding)
Alias_symbol (synonym)FLJ40224
Other alias
HGNC (Hugo) KIRREL3-AS3
LocusID (NCBI) 283165
Atlas_Id 64941
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 126872805 and ends at 126875953 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KIRREL3-AS3   26855
Cards
Entrez_Gene (NCBI)KIRREL3-AS3  283165  KIRREL3 antisense RNA 3
AliasesNCRNA00288; PRR10
GeneCards (Weizmann)KIRREL3-AS3
Ensembl hg19 (Hinxton)ENSG00000218109 [Gene_View]  chr11:126872805-126875953 [Contig_View]  KIRREL3-AS3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000218109 [Gene_View]  chr11:126872805-126875953 [Contig_View]  KIRREL3-AS3 [Vega]
ICGC DataPortalENSG00000218109
TCGA cBioPortalKIRREL3-AS3
AceView (NCBI)KIRREL3-AS3
Genatlas (Paris)KIRREL3-AS3
WikiGenes283165
SOURCE (Princeton)KIRREL3-AS3
Genetics Home Reference (NIH)KIRREL3-AS3
Genomic and cartography
GoldenPath hg19 (UCSC)KIRREL3-AS3  -     chr11:126872805-126875953 +  11q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KIRREL3-AS3  -     11q24.2   [Description]    (hg38-Dec_2013)
EnsemblKIRREL3-AS3 - 11q24.2 [CytoView hg19]  KIRREL3-AS3 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIKIRREL3-AS3 [Mapview hg19]  KIRREL3-AS3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097543 BC113593 BC113597 HG504308
RefSeq transcript (Entrez)NM_173579
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)KIRREL3-AS3
Cluster EST : UnigeneHs.730461 [ NCBI ]
CGAP (NCI)Hs.730461
Alternative Splicing GalleryENSG00000218109
Gene ExpressionKIRREL3-AS3 [ NCBI-GEO ]   KIRREL3-AS3 [ EBI - ARRAY_EXPRESS ]   KIRREL3-AS3 [ SEEK ]   KIRREL3-AS3 [ MEM ]
Gene Expression Viewer (FireBrowse)KIRREL3-AS3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283165
GTEX Portal (Tissue expression)KIRREL3-AS3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7Y1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7Y1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7Y1
Splice isoforms : SwissVarQ8N7Y1
PhosPhoSitePlusQ8N7Y1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KIRREL3-AS3
DMDM Disease mutations283165
Blocks (Seattle)KIRREL3-AS3
SuperfamilyQ8N7Y1
Human Protein AtlasENSG00000218109
Peptide AtlasQ8N7Y1
HPRD08274
IPIIPI00167386   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7Y1
IntAct (EBI)Q8N7Y1
FunCoupENSG00000218109
BioGRIDKIRREL3-AS3
STRING (EMBL)KIRREL3-AS3
ZODIACKIRREL3-AS3
Ontologies - Pathways
QuickGOQ8N7Y1
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkKIRREL3-AS3
Atlas of Cancer Signalling NetworkKIRREL3-AS3
Wikipedia pathwaysKIRREL3-AS3
Orthology - Evolution
OrthoDB283165
GeneTree (enSembl)ENSG00000218109
Phylogenetic Trees/Animal Genes : TreeFamKIRREL3-AS3
HOVERGENQ8N7Y1
HOGENOMQ8N7Y1
Homologs : HomoloGeneKIRREL3-AS3
Homology/Alignments : Family Browser (UCSC)KIRREL3-AS3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKIRREL3-AS3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIRREL3-AS3
dbVarKIRREL3-AS3
ClinVarKIRREL3-AS3
1000_GenomesKIRREL3-AS3 
Exome Variant ServerKIRREL3-AS3
ExAC (Exome Aggregation Consortium)KIRREL3-AS3 (select the gene name)
Genetic variants : HAPMAP283165
Genomic Variants (DGV)KIRREL3-AS3 [DGVbeta]
DECIPHER (Syndromes)11:126872805-126875953  ENSG00000218109
CONAN: Copy Number AnalysisKIRREL3-AS3 
Mutations
ICGC Data PortalKIRREL3-AS3 
TCGA Data PortalKIRREL3-AS3 
Broad Tumor PortalKIRREL3-AS3
OASIS PortalKIRREL3-AS3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDKIRREL3-AS3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KIRREL3-AS3
DgiDB (Drug Gene Interaction Database)KIRREL3-AS3
DoCM (Curated mutations)KIRREL3-AS3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KIRREL3-AS3 (select a term)
intoGenKIRREL3-AS3
Cancer3DKIRREL3-AS3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKIRREL3-AS3
Genetic Testing Registry KIRREL3-AS3
NextProtQ8N7Y1 [Medical]
TSGene283165
GENETestsKIRREL3-AS3
Huge Navigator KIRREL3-AS3 [HugePedia]
snp3D : Map Gene to Disease283165
BioCentury BCIQKIRREL3-AS3
ClinGenKIRREL3-AS3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283165
Chemical/Pharm GKB GenePA142671130
Clinical trialKIRREL3-AS3
Miscellaneous
canSAR (ICR)KIRREL3-AS3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKIRREL3-AS3
EVEXKIRREL3-AS3
GoPubMedKIRREL3-AS3
iHOPKIRREL3-AS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:56 CET 2017

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