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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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KLF13 (Kruppel-like factor 13)

Identity

Other namesBTEB3
FKLF2
NSLP1
RFLAT-1
RFLAT1
HGNC (Hugo) KLF13
LocusID (NCBI) 51621
Location 15q13.3
Location_base_pair Starts at 31619058 and ends at 31727868 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)KLF13   13672
Cards
Entrez_Gene (NCBI)KLF13  51621  Kruppel-like factor 13
GeneCards (Weizmann)KLF13
Ensembl hg19 (Hinxton)ENSG00000169926 [Gene_View]  chr15:31619058-31727868 [Contig_View]  KLF13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169926 [Gene_View]  chr15:31619058-31727868 [Contig_View]  KLF13 [Vega]
ICGC DataPortalENSG00000169926
cBioPortalKLF13
AceView (NCBI)KLF13
Genatlas (Paris)KLF13
WikiGenes51621
SOURCE (Princeton)KLF13
Genomic and cartography
GoldenPath hg19 (UCSC)KLF13  -     chr15:31619058-31727868 +  15q13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KLF13  -     15q13.3   [Description]    (hg38-Dec_2013)
EnsemblKLF13 - 15q13.3 [CytoView hg19]  KLF13 - 15q13.3 [CytoView hg38]
Mapping of homologs : NCBIKLF13 [Mapview hg19]  KLF13 [Mapview hg38]
OMIM605328   
Gene and transcription
Genbank (Entrez)AF132599 AF150628 AI074707 AI084187 AK093758
RefSeq transcript (Entrez)NM_001302461 NM_015995
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NT_187660 NW_004929398 NW_011332701
Consensus coding sequences : CCDS (NCBI)KLF13
Cluster EST : UnigeneHs.585100 [ NCBI ]
CGAP (NCI)Hs.585100
Alternative Splicing : Fast-db (Paris)GSHG0009726
Alternative Splicing GalleryENSG00000169926
Gene ExpressionKLF13 [ NCBI-GEO ]     KLF13 [ SEEK ]   KLF13 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2Y9 (Uniprot)
NextProtQ9Y2Y9  [Medical]
With graphics : InterProQ9Y2Y9
Splice isoforms : SwissVarQ9Y2Y9 (Swissvar)
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrQ9Y2Y9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
DMDM Disease mutations51621
Blocks (Seattle)Q9Y2Y9
Human Protein AtlasENSG00000169926
Peptide AtlasQ9Y2Y9
HPRD05620
IPIIPI00219691   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2Y9
IntAct (EBI)Q9Y2Y9
FunCoupENSG00000169926
BioGRIDKLF13
IntegromeDBKLF13
STRING (EMBL)KLF13
Ontologies - Pathways
QuickGOQ9Y2Y9
Ontology : AmiGODNA binding  protein binding  nucleus  transcription from RNA polymerase II promoter  negative regulation of cell proliferation  negative regulation of erythrocyte differentiation  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription from RNA polymerase II promoter  negative regulation of cell proliferation  negative regulation of erythrocyte differentiation  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Protein Interaction DatabaseKLF13
DoCM (Curated mutations)KLF13
Wikipedia pathwaysKLF13
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerKLF13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KLF13
dbVarKLF13
ClinVarKLF13
1000_GenomesKLF13 
Exome Variant ServerKLF13
SNP (GeneSNP Utah)KLF13
SNP : HGBaseKLF13
Genetic variants : HAPMAPKLF13
Genomic Variants (DGV)KLF13 [DGVbeta]
Mutations
ICGC Data PortalENSG00000169926 
Somatic Mutations in Cancer : COSMICKLF13 
CONAN: Copy Number AnalysisKLF13 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)15:31619058-31727868
Mutations and Diseases : HGMDKLF13
OMIM605328   
MedgenKLF13
NextProtQ9Y2Y9 [Medical]
GENETestsKLF13
Disease Genetic AssociationKLF13
Huge Navigator KLF13 [HugePedia]  KLF13 [HugeCancerGEM]
snp3D : Map Gene to Disease51621
DGIdb (Drug Gene Interaction db)KLF13
General knowledge
Homologs : HomoloGeneKLF13
Homology/Alignments : Family Browser (UCSC)KLF13
Phylogenetic Trees/Animal Genes : TreeFamKLF13
Chemical/Protein Interactions : CTD51621
Chemical/Pharm GKB GenePA30133
Clinical trialKLF13
Cancer Resource (Charite)ENSG00000169926
Other databases
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
CoreMineKLF13
GoPubMedKLF13
iHOPKLF13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 15:46:56 CET 2015

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jlhuret@AtlasGeneticsOncology.org.