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KLF13 (Kruppel-like factor 13)

Identity

Other namesBTEB3
FKLF2
NSLP1
RFLAT-1
RFLAT1
HGNC (Hugo) KLF13
LocusID (NCBI) 51621
Location 15q13.3
Location_base_pair Starts at 31619083 and ends at 31670102 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)KLF13   13672
Cards
Entrez_Gene (NCBI)KLF13  51621  Kruppel-like factor 13
GeneCards (Weizmann)KLF13
Ensembl hg19 (Hinxton)ENSG00000169926 [Gene_View]  chr15:31619083-31670102 [Contig_View]  KLF13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169926 [Gene_View]  chr15:31619083-31670102 [Contig_View]  KLF13 [Vega]
ICGC DataPortalENSG00000169926
cBioPortalKLF13
AceView (NCBI)KLF13
Genatlas (Paris)KLF13
WikiGenes51621
SOURCE (Princeton)KLF13
Genomic and cartography
GoldenPath hg19 (UCSC)KLF13  -     chr15:31619083-31670102 +  15q13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KLF13  -     15q13.3   [Description]    (hg38-Dec_2013)
EnsemblKLF13 - 15q13.3 [CytoView hg19]  KLF13 - 15q13.3 [CytoView hg38]
Mapping of homologs : NCBIKLF13 [Mapview hg19]  KLF13 [Mapview hg38]
OMIM605328   
Gene and transcription
Genbank (Entrez)AF132599 AF150628 AL390127 BC010438 BC012741
RefSeq transcript (Entrez)NM_015995
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NT_010194 NT_187660 NW_001838206 NW_004929398
Consensus coding sequences : CCDS (NCBI)KLF13
Cluster EST : UnigeneHs.525752 [ NCBI ]
CGAP (NCI)Hs.525752
Alternative Splicing : Fast-db (Paris)GSHG0009726
Alternative Splicing GalleryENSG00000169926
Gene ExpressionKLF13 [ NCBI-GEO ]     KLF13 [ SEEK ]   KLF13 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2Y9 (Uniprot)
NextProtQ9Y2Y9  [Medical]
With graphics : InterProQ9Y2Y9
Splice isoforms : SwissVarQ9Y2Y9 (Swissvar)
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrQ9Y2Y9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
DMDM Disease mutations51621
Blocks (Seattle)Q9Y2Y9
Human Protein AtlasENSG00000169926
Peptide AtlasQ9Y2Y9
HPRD05620
IPIIPI00219691   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2Y9
IntAct (EBI)Q9Y2Y9
FunCoupENSG00000169926
BioGRIDKLF13
IntegromeDBKLF13
STRING (EMBL)KLF13
Ontologies - Pathways
QuickGOQ9Y2Y9
Ontology : AmiGODNA binding  protein binding  nucleus  transcription from RNA polymerase II promoter  negative regulation of cell proliferation  negative regulation of erythrocyte differentiation  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription from RNA polymerase II promoter  negative regulation of cell proliferation  negative regulation of erythrocyte differentiation  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Protein Interaction DatabaseKLF13
DoCM (Curated mutations)KLF13
Wikipedia pathwaysKLF13
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerKLF13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KLF13
dbVarKLF13
ClinVarKLF13
1000_GenomesKLF13 
Exome Variant ServerKLF13
SNP (GeneSNP Utah)KLF13
SNP : HGBaseKLF13
Genetic variants : HAPMAPKLF13
Genomic VariantsKLF13  KLF13 [DGVbeta]
Mutations
ICGC Data PortalENSG00000169926 
Somatic Mutations in Cancer : COSMICKLF13 
CONAN: Copy Number AnalysisKLF13 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)15:31619083-31670102
Mutations and Diseases : HGMDKLF13
OMIM605328   
MedgenKLF13
NextProtQ9Y2Y9 [Medical]
GENETestsKLF13
Disease Genetic AssociationKLF13
Huge Navigator KLF13 [HugePedia]  KLF13 [HugeCancerGEM]
snp3D : Map Gene to Disease51621
DGIdb (Drug Gene Interaction db)KLF13
General knowledge
Homologs : HomoloGeneKLF13
Homology/Alignments : Family Browser (UCSC)KLF13
Phylogenetic Trees/Animal Genes : TreeFamKLF13
Chemical/Protein Interactions : CTD51621
Chemical/Pharm GKB GenePA30133
Clinical trialKLF13
Cancer Resource (Charite)ENSG00000169926
Other databases
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
CoreMineKLF13
GoPubMedKLF13
iHOPKLF13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 22:19:26 CET 2014

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