Atlas of Genetics and Cytogenetics in Oncology and Haematology

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KLF13 (Kruppel-like factor 13)

Identity

Other namesBTEB3
FKLF2
NSLP1
RFLAT-1
RFLAT1
HGNC (Hugo) KLF13
LocusID (NCBI) 51621
Location 15q13.3
Location_base_pair Starts at 31619083 and ends at 31670102 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)KLF13   13672
Entrez_Gene (NCBI)KLF13  51621  Kruppel-like factor 13
Cards
GeneCards (Weizmann)KLF13
Ensembl (Hinxton)ENSG00000169926 [Gene_View]  chr15:31619083-31670102 [Contig_View]  KLF13 [Vega]
AceView (NCBI)KLF13
Genatlas (Paris)KLF13
SOURCE (Stanford)NM_015995
Genomic and cartography
GoldenPath (UCSC)KLF13  -  15q13.3   chr15:31619083-31670102 +  15q13.3   [Description]    (hg19-Feb_2009)
EnsemblKLF13 - 15q13.3 [CytoView]
Mapping of homologs : NCBIKLF13 [Mapview]
OMIM605328   
Gene and transcription
Genbank (Entrez)AF132599 AF150628 AL390127 BC010438 BC012741
RefSeq transcript (SRS)NM_015995
RefSeq transcript (Entrez)NM_015995
RefSeq genomic (SRS)AC_000147 NC_000015 NC_018926 NT_010194 NW_001838206 NW_004078084
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NT_010194 NW_001838206 NW_004078084
Consensus coding sequences : CCDS (NCBI)KLF13
Cluster EST : UnigeneHs.525752 [ SRS ] Hs.525752 [ NCBI ]
CGAP (NCI)Hs.525752
Alternative Splicing : Fast-db (Paris)GSHG0009726
Alternative Splicing GalleryENSG00000169926
Gene ExpressionKLF13 [ NCBI-GEO ]   KLF13 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2Y9 (SRS) Q9Y2Y9 (Uniprot)
NextProtQ9Y2Y9
With graphics : InterProQ9Y2Y9
Splice isoforms : SwissVarQ9Y2Y9(Swissvar)
Domaine pattern : Prosite (SRS)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (SRS)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrQ9Y2Y9
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
DMDM51621
Blocks (Seattle)Q9Y2Y9
Human Protein AtlasENSG00000169926
HPRD05620
IPIIPI00219691   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2Y9
IntAct (EBI)Q9Y2Y9
FunCoupENSG00000169926
REACTOMEKLF13
Protein Interaction Database51621
BioGRIDKLF13
InParanoidQ9Y2Y9
Interologous Interaction database Q9Y2Y9
IntegromeDBKLF13
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)KLF13
SNP (GeneSNP Utah)KLF13
SNP : HGBaseKLF13
Genetic variants : HAPMAPKLF13
Somatic Mutations in Cancer : COSMICKLF13 
CONAN: Copy Number AnalysisKLF13 
Mutations and Diseases : HGMDKLF13
OMIM605328   
GENETests605328   
Disease Genetic AssociationKLF13
Huge Navigator KLF13 [HugePedia]  KLF13 [HugeCancerGEM]
Genomic VariantsKLF13  KLF13 [DGVbeta]
ClinVarKLF13
snp3D : Map Gene to Disease51621
General knowledge
Homologs : HomoloGeneKLF13
Homology/Alignments : Family Browser (UCSC)KLF13
Phylogenetic Trees/Animal Genes : TreeFamKLF13
Chemical/Protein Interactions : CTD51621
Chemical/Pharm GKB GenePA30133
Clinical trialKLF13
Cancer Resource (Charite)ENSG00000169926
Ontology : AmiGODNA binding  protein binding  nucleus  transcription from RNA polymerase II promoter  zinc ion binding  negative regulation of cell proliferation  negative regulation of erythrocyte differentiation  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription from RNA polymerase II promoter  zinc ion binding  negative regulation of cell proliferation  negative regulation of erythrocyte differentiation  positive regulation of transcription from RNA polymerase II promoter  
Other databases
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
PubGeneKLF13
iHOPKLF13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:40:54 CEST 2013
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