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KLF13 (Kruppel-like factor 13)

Identity

Other namesBTEB3
FKLF2
NSLP1
RFLAT-1
RFLAT1
HGNC (Hugo) KLF13
LocusID (NCBI) 51621
Atlas_Id 51600
Location 15q13.3
Location_base_pair Starts at 31619058 and ends at 31727868 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KLF13 (15q13.3) / KLF13 (15q13.3)KLF13 (15q13.3) / NBPF14 (1q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KLF13   13672
Cards
Entrez_Gene (NCBI)KLF13  51621  Kruppel-like factor 13
GeneCards (Weizmann)KLF13
Ensembl hg19 (Hinxton)ENSG00000169926 [Gene_View]  chr15:31619058-31727868 [Contig_View]  KLF13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169926 [Gene_View]  chr15:31619058-31727868 [Contig_View]  KLF13 [Vega]
ICGC DataPortalENSG00000169926
TCGA cBioPortalKLF13
AceView (NCBI)KLF13
Genatlas (Paris)KLF13
WikiGenes51621
SOURCE (Princeton)KLF13
Genomic and cartography
GoldenPath hg19 (UCSC)KLF13  -     chr15:31619058-31727868 +  15q13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KLF13  -     15q13.3   [Description]    (hg38-Dec_2013)
EnsemblKLF13 - 15q13.3 [CytoView hg19]  KLF13 - 15q13.3 [CytoView hg38]
Mapping of homologs : NCBIKLF13 [Mapview hg19]  KLF13 [Mapview hg38]
OMIM605328   612001   
Gene and transcription
Genbank (Entrez)AF132599 AF150628 AI074707 AI084187 AK127052
RefSeq transcript (Entrez)NM_001302461 NM_015995
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NT_187660 NW_004929398 NW_011332701
Consensus coding sequences : CCDS (NCBI)KLF13
Cluster EST : UnigeneHs.585100 [ NCBI ]
CGAP (NCI)Hs.585100
Alternative Splicing : Fast-db (Paris)GSHG0009726
Alternative Splicing GalleryENSG00000169926
Gene ExpressionKLF13 [ NCBI-GEO ]   KLF13 [ EBI - ARRAY_EXPRESS ]   KLF13 [ SEEK ]   KLF13 [ MEM ]
Gene Expression Viewer (FireBrowse)KLF13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)51621
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2Y9 (Uniprot)
NextProtQ9Y2Y9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2Y9
Splice isoforms : SwissVarQ9Y2Y9 (Swissvar)
PhosPhoSitePlusQ9Y2Y9
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Sp1_fam    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
DMDM Disease mutations51621
Blocks (Seattle)KLF13
SuperfamilyQ9Y2Y9
Human Protein AtlasENSG00000169926
Peptide AtlasQ9Y2Y9
HPRD05620
IPIIPI00219691   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2Y9
IntAct (EBI)Q9Y2Y9
FunCoupENSG00000169926
BioGRIDKLF13
STRING (EMBL)KLF13
ZODIACKLF13
Ontologies - Pathways
QuickGOQ9Y2Y9
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  protein binding  nucleus  transcription from RNA polymerase II promoter  negative regulation of cell proliferation  negative regulation of erythrocyte differentiation  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  protein binding  nucleus  transcription from RNA polymerase II promoter  negative regulation of cell proliferation  negative regulation of erythrocyte differentiation  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx Network
Atlas of Cancer Signalling NetworkKLF13
Wikipedia pathwaysKLF13
Orthology - Evolution
OrthoDB51621
GeneTree (enSembl)ENSG00000169926
Phylogenetic Trees/Animal Genes : TreeFamKLF13
Homologs : HomoloGeneKLF13
Homology/Alignments : Family Browser (UCSC)KLF13
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerKLF13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KLF13
dbVarKLF13
ClinVarKLF13
1000_GenomesKLF13 
Exome Variant ServerKLF13
ExAC (Exome Aggregation Consortium)KLF13 (select the gene name)
SNP (GeneSNP Utah)KLF13
SNP : HGBaseKLF13
Genetic variants : HAPMAPKLF13
Genomic Variants (DGV)KLF13 [DGVbeta]
Mutations
ICGC Data PortalKLF13 
TCGA Data PortalKLF13 
Broad Tumor PortalKLF13
OASIS PortalKLF13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKLF13 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KLF13
DgiDB (Drug Gene Interaction Database)KLF13
DoCM (Curated mutations)KLF13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KLF13 (select a term)
intoGenKLF13
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)15:31619058-31727868
CONAN: Copy Number AnalysisKLF13 
Mutations and Diseases : HGMDKLF13
OMIM605328    612001   
MedgenKLF13
Genetic Testing Registry KLF13
NextProtQ9Y2Y9 [Medical]
TSGene51621
GENETestsKLF13
Huge Navigator KLF13 [HugePedia]  KLF13 [HugeCancerGEM]
snp3D : Map Gene to Disease51621
BioCentury BCIQKLF13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51621
Chemical/Pharm GKB GenePA30133
Clinical trialKLF13
Miscellaneous
canSAR (ICR)KLF13 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKLF13
GoPubMedKLF13
iHOPKLF13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Apr 16 17:50:15 CEST 2016

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