Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KLF15 (Kruppel-like factor 15)

Identity

Alias_symbol (synonym)KKLF
Other alias
HGNC (Hugo) KLF15
LocusID (NCBI) 28999
Atlas_Id 55712
Location 3q21.3  [Link to chromosome band 3q21]
Location_base_pair Starts at 126061478 and ends at 126076236 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KLF15   14536
Cards
Entrez_Gene (NCBI)KLF15  28999  Kruppel-like factor 15
AliasesKKLF
GeneCards (Weizmann)KLF15
Ensembl hg19 (Hinxton)ENSG00000163884 [Gene_View]  chr3:126061478-126076236 [Contig_View]  KLF15 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163884 [Gene_View]  chr3:126061478-126076236 [Contig_View]  KLF15 [Vega]
ICGC DataPortalENSG00000163884
TCGA cBioPortalKLF15
AceView (NCBI)KLF15
Genatlas (Paris)KLF15
WikiGenes28999
SOURCE (Princeton)KLF15
Genetics Home Reference (NIH)KLF15
Genomic and cartography
GoldenPath hg19 (UCSC)KLF15  -     chr3:126061478-126076236 -  3q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KLF15  -     3q21.3   [Description]    (hg38-Dec_2013)
EnsemblKLF15 - 3q21.3 [CytoView hg19]  KLF15 - 3q21.3 [CytoView hg38]
Mapping of homologs : NCBIKLF15 [Mapview hg19]  KLF15 [Mapview hg38]
OMIM606465   
Gene and transcription
Genbank (Entrez)AB029254 BC036733 BX649049 DQ890911 DQ894062
RefSeq transcript (Entrez)NM_014079
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)KLF15
Cluster EST : UnigeneHs.272215 [ NCBI ]
CGAP (NCI)Hs.272215
Alternative Splicing GalleryENSG00000163884
Gene ExpressionKLF15 [ NCBI-GEO ]   KLF15 [ EBI - ARRAY_EXPRESS ]   KLF15 [ SEEK ]   KLF15 [ MEM ]
Gene Expression Viewer (FireBrowse)KLF15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28999
GTEX Portal (Tissue expression)KLF15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UIH9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UIH9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UIH9
Splice isoforms : SwissVarQ9UIH9
PhosPhoSitePlusQ9UIH9
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)KLF15
DMDM Disease mutations28999
Blocks (Seattle)KLF15
PDB (SRS)2ENT   
PDB (PDBSum)2ENT   
PDB (IMB)2ENT   
PDB (RSDB)2ENT   
Structural Biology KnowledgeBase2ENT   
SCOP (Structural Classification of Proteins)2ENT   
CATH (Classification of proteins structures)2ENT   
SuperfamilyQ9UIH9
Human Protein AtlasENSG00000163884
Peptide AtlasQ9UIH9
HPRD07568
IPIIPI00022405   
Protein Interaction databases
DIP (DOE-UCLA)Q9UIH9
IntAct (EBI)Q9UIH9
FunCoupENSG00000163884
BioGRIDKLF15
STRING (EMBL)KLF15
ZODIACKLF15
Ontologies - Pathways
QuickGOQ9UIH9
Ontology : AmiGOtranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  protein binding  nucleus  transcription from RNA polymerase II promoter  glial cell differentiation  cardiac muscle hypertrophy in response to stress  glucose transport  transcription regulatory region DNA binding  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  glomerular visceral epithelial cell differentiation  cellular response to peptide  negative regulation of peptidyl-lysine acetylation  
Ontology : EGO-EBItranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  protein binding  nucleus  transcription from RNA polymerase II promoter  glial cell differentiation  cardiac muscle hypertrophy in response to stress  glucose transport  transcription regulatory region DNA binding  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  glomerular visceral epithelial cell differentiation  cellular response to peptide  negative regulation of peptidyl-lysine acetylation  
NDEx NetworkKLF15
Atlas of Cancer Signalling NetworkKLF15
Wikipedia pathwaysKLF15
Orthology - Evolution
OrthoDB28999
GeneTree (enSembl)ENSG00000163884
Phylogenetic Trees/Animal Genes : TreeFamKLF15
HOVERGENQ9UIH9
HOGENOMQ9UIH9
Homologs : HomoloGeneKLF15
Homology/Alignments : Family Browser (UCSC)KLF15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKLF15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KLF15
dbVarKLF15
ClinVarKLF15
1000_GenomesKLF15 
Exome Variant ServerKLF15
ExAC (Exome Aggregation Consortium)KLF15 (select the gene name)
Genetic variants : HAPMAP28999
Genomic Variants (DGV)KLF15 [DGVbeta]
DECIPHER (Syndromes)3:126061478-126076236  ENSG00000163884
CONAN: Copy Number AnalysisKLF15 
Mutations
ICGC Data PortalKLF15 
TCGA Data PortalKLF15 
Broad Tumor PortalKLF15
OASIS PortalKLF15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKLF15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKLF15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KLF15
DgiDB (Drug Gene Interaction Database)KLF15
DoCM (Curated mutations)KLF15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KLF15 (select a term)
intoGenKLF15
Cancer3DKLF15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606465   
Orphanet
MedgenKLF15
Genetic Testing Registry KLF15
NextProtQ9UIH9 [Medical]
TSGene28999
GENETestsKLF15
Huge Navigator KLF15 [HugePedia]
snp3D : Map Gene to Disease28999
BioCentury BCIQKLF15
ClinGenKLF15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28999
Chemical/Pharm GKB GenePA30134
Clinical trialKLF15
Miscellaneous
canSAR (ICR)KLF15 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKLF15
EVEXKLF15
GoPubMedKLF15
iHOPKLF15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:12:02 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.