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KLF16 (Kruppel like factor 16)

Identity

Alias (NCBI)BTEB4
DRRF
NSLP2
HGNC (Hugo) KLF16
HGNC Alias symbNSLP2
BTEB4
DRRF
LocusID (NCBI) 83855
Atlas_Id 58158
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1852399 and ends at 1863579 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TCF3 (19p13.3) / KLF16 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)KLF16   16857
Cards
Entrez_Gene (NCBI)KLF16    Kruppel like factor 16
AliasesBTEB4; DRRF; NSLP2
GeneCards (Weizmann)KLF16
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr19:1852399-1863579 [Contig_View]  KLF16 [Vega]
TCGA cBioPortalKLF16
AceView (NCBI)KLF16
Genatlas (Paris)KLF16
SOURCE (Princeton)KLF16
Genetics Home Reference (NIH)KLF16
Genomic and cartography
GoldenPath hg38 (UCSC)KLF16  -     chr19:1852399-1863579 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KLF16  -     19p13.3   [Description]    (hg19-Feb_2009)
GoldenPathKLF16 - 19p13.3 [CytoView hg19]  KLF16 - 19p13.3 [CytoView hg38]
genome Data Viewer NCBIKLF16 [Mapview hg19]  
OMIM606139   
Gene and transcription
Genbank (Entrez)AF327440 AI026907 AK025941 BE243730 BE464096
RefSeq transcript (Entrez)NM_031918
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KLF16
Gene ExpressionKLF16 [ NCBI-GEO ]   KLF16 [ EBI - ARRAY_EXPRESS ]   KLF16 [ SEEK ]   KLF16 [ MEM ]
Gene Expression Viewer (FireBrowse)KLF16 [ Firebrowse - Broad ]
GenevisibleExpression of KLF16 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83855
GTEX Portal (Tissue expression)KLF16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXK1
Splice isoforms : SwissVarQ9BXK1
PhosPhoSitePlusQ9BXK1
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)KLF16
Blocks (Seattle)KLF16
SuperfamilyQ9BXK1
Peptide AtlasQ9BXK1
IPIIPI00011115   IPI00884174   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXK1
IntAct (EBI)Q9BXK1
BioGRIDKLF16
STRING (EMBL)KLF16
ZODIACKLF16
Ontologies - Pathways
QuickGOQ9BXK1
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  nuclear chromatin  transcription regulatory region sequence-specific DNA binding  RNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription repressor activity, RNA polymerase II-specific  nucleus  dopamine receptor signaling pathway  positive regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  nuclear chromatin  transcription regulatory region sequence-specific DNA binding  RNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription repressor activity, RNA polymerase II-specific  nucleus  dopamine receptor signaling pathway  positive regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkKLF16
Atlas of Cancer Signalling NetworkKLF16
Wikipedia pathwaysKLF16
Orthology - Evolution
OrthoDB83855
Phylogenetic Trees/Animal Genes : TreeFamKLF16
HOGENOMQ9BXK1
Homologs : HomoloGeneKLF16
Homology/Alignments : Family Browser (UCSC)KLF16
Gene fusions - Rearrangements
Fusion : QuiverKLF16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKLF16 [hg38]
dbVarKLF16
ClinVarKLF16
MonarchKLF16
1000_GenomesKLF16 
Exome Variant ServerKLF16
Varsome BrowserKLF16
Genomic Variants (DGV)KLF16 [DGVbeta]
DECIPHERKLF16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKLF16 
Mutations
ICGC Data PortalKLF16 
TCGA Data PortalKLF16 
Broad Tumor PortalKLF16
OASIS PortalKLF16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKLF16  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DKLF16
Mutations and Diseases : HGMDKLF16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KLF16
DgiDB (Drug Gene Interaction Database)KLF16
DoCM (Curated mutations)KLF16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KLF16 (select a term)
intoGenKLF16
Cancer3DKLF16(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606139   
Orphanet
DisGeNETKLF16
MedgenKLF16
Genetic Testing Registry KLF16
NextProtQ9BXK1 [Medical]
GENETestsKLF16
Target ValidationKLF16
Huge Navigator KLF16 [HugePedia]
ClinGenKLF16
Clinical trials, drugs, therapy
MyCancerGenomeKLF16
Protein Interactions : CTD
Pharm GKB GenePA30135
Clinical trialKLF16
Miscellaneous
canSAR (ICR)KLF16 (select the gene name)
HarmonizomeKLF16
DataMed IndexKLF16
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXKLF16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 20:54:22 CET 2020

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