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KLF16 (Kruppel-like factor 16)

Identity

Alias_symbol (synonym)NSLP2
BTEB4
DRRF
Other alias
HGNC (Hugo) KLF16
LocusID (NCBI) 83855
Atlas_Id 64949
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1852398 and ends at 1863564 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TCF3 (19p13.3) / KLF16 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KLF16   16857
Cards
Entrez_Gene (NCBI)KLF16  83855  Kruppel-like factor 16
AliasesBTEB4; DRRF; NSLP2
GeneCards (Weizmann)KLF16
Ensembl hg19 (Hinxton)ENSG00000129911 [Gene_View]  chr19:1852398-1863564 [Contig_View]  KLF16 [Vega]
Ensembl hg38 (Hinxton)ENSG00000129911 [Gene_View]  chr19:1852398-1863564 [Contig_View]  KLF16 [Vega]
ICGC DataPortalENSG00000129911
TCGA cBioPortalKLF16
AceView (NCBI)KLF16
Genatlas (Paris)KLF16
WikiGenes83855
SOURCE (Princeton)KLF16
Genetics Home Reference (NIH)KLF16
Genomic and cartography
GoldenPath hg19 (UCSC)KLF16  -     chr19:1852398-1863564 -  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KLF16  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblKLF16 - 19p13.3 [CytoView hg19]  KLF16 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIKLF16 [Mapview hg19]  KLF16 [Mapview hg38]
OMIM606139   
Gene and transcription
Genbank (Entrez)AF327440 AK025941 BC148407 BC148793 BE243730
RefSeq transcript (Entrez)NM_031918
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)KLF16
Cluster EST : UnigeneHs.136280 [ NCBI ]
CGAP (NCI)Hs.136280
Alternative Splicing GalleryENSG00000129911
Gene ExpressionKLF16 [ NCBI-GEO ]   KLF16 [ EBI - ARRAY_EXPRESS ]   KLF16 [ SEEK ]   KLF16 [ MEM ]
Gene Expression Viewer (FireBrowse)KLF16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83855
GTEX Portal (Tissue expression)KLF16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXK1
Splice isoforms : SwissVarQ9BXK1
PhosPhoSitePlusQ9BXK1
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)KLF16
DMDM Disease mutations83855
Blocks (Seattle)KLF16
SuperfamilyQ9BXK1
Human Protein AtlasENSG00000129911
Peptide AtlasQ9BXK1
HPRD12090
IPIIPI00011115   IPI00884174   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXK1
IntAct (EBI)Q9BXK1
FunCoupENSG00000129911
BioGRIDKLF16
STRING (EMBL)KLF16
ZODIACKLF16
Ontologies - Pathways
QuickGOQ9BXK1
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  dopamine receptor signaling pathway  metal ion binding  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  dopamine receptor signaling pathway  metal ion binding  
NDEx NetworkKLF16
Atlas of Cancer Signalling NetworkKLF16
Wikipedia pathwaysKLF16
Orthology - Evolution
OrthoDB83855
GeneTree (enSembl)ENSG00000129911
Phylogenetic Trees/Animal Genes : TreeFamKLF16
HOVERGENQ9BXK1
HOGENOMQ9BXK1
Homologs : HomoloGeneKLF16
Homology/Alignments : Family Browser (UCSC)KLF16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKLF16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KLF16
dbVarKLF16
ClinVarKLF16
1000_GenomesKLF16 
Exome Variant ServerKLF16
ExAC (Exome Aggregation Consortium)KLF16 (select the gene name)
Genetic variants : HAPMAP83855
Genomic Variants (DGV)KLF16 [DGVbeta]
DECIPHER (Syndromes)19:1852398-1863564  ENSG00000129911
CONAN: Copy Number AnalysisKLF16 
Mutations
ICGC Data PortalKLF16 
TCGA Data PortalKLF16 
Broad Tumor PortalKLF16
OASIS PortalKLF16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKLF16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKLF16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KLF16
DgiDB (Drug Gene Interaction Database)KLF16
DoCM (Curated mutations)KLF16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KLF16 (select a term)
intoGenKLF16
Cancer3DKLF16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606139   
Orphanet
MedgenKLF16
Genetic Testing Registry KLF16
NextProtQ9BXK1 [Medical]
TSGene83855
GENETestsKLF16
Huge Navigator KLF16 [HugePedia]
snp3D : Map Gene to Disease83855
BioCentury BCIQKLF16
ClinGenKLF16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83855
Chemical/Pharm GKB GenePA30135
Clinical trialKLF16
Miscellaneous
canSAR (ICR)KLF16 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKLF16
EVEXKLF16
GoPubMedKLF16
iHOPKLF16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:57 CET 2017

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