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KLF3-AS1 (KLF3 antisense RNA 1)

Identity

Alias_symbol (synonym)FLJ13197
Other alias-
HGNC (Hugo) KLF3-AS1
LocusID (NCBI) 79667
Atlas_Id 64950
Location 4p14  [Link to chromosome band 4p14]
Location_base_pair Starts at 38626406 and ends at 38664809 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KLF3-AS1   25796
Cards
Entrez_Gene (NCBI)KLF3-AS1  79667  KLF3 antisense RNA 1
Aliases
GeneCards (Weizmann)KLF3-AS1
Ensembl hg19 (Hinxton)ENSG00000231160 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231160 [Gene_View]  chr4:38626406-38664809 [Contig_View]  KLF3-AS1 [Vega]
ICGC DataPortalENSG00000231160
TCGA cBioPortalKLF3-AS1
AceView (NCBI)KLF3-AS1
Genatlas (Paris)KLF3-AS1
WikiGenes79667
SOURCE (Princeton)KLF3-AS1
Genetics Home Reference (NIH)KLF3-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)KLF3-AS1  -     chr4:38626406-38664809 -  4p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KLF3-AS1  -     4p14   [Description]    (hg19-Feb_2009)
EnsemblKLF3-AS1 - 4p14 [CytoView hg19]  KLF3-AS1 - 4p14 [CytoView hg38]
Mapping of homologs : NCBIKLF3-AS1 [Mapview hg19]  KLF3-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF289565 AK023259
RefSeq transcript (Entrez)NM_024614
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KLF3-AS1
Cluster EST : UnigeneHs.29725 [ NCBI ]
CGAP (NCI)Hs.29725
Alternative Splicing GalleryENSG00000231160
Gene ExpressionKLF3-AS1 [ NCBI-GEO ]   KLF3-AS1 [ EBI - ARRAY_EXPRESS ]   KLF3-AS1 [ SEEK ]   KLF3-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)KLF3-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79667
GTEX Portal (Tissue expression)KLF3-AS1
Human Protein AtlasENSG00000231160-KLF3-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H8V8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H8V8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H8V8
Splice isoforms : SwissVarQ9H8V8
PhosPhoSitePlusQ9H8V8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KLF3-AS1
DMDM Disease mutations79667
Blocks (Seattle)KLF3-AS1
SuperfamilyQ9H8V8
Human Protein Atlas [tissue]ENSG00000231160-KLF3-AS1 [tissue]
Peptide AtlasQ9H8V8
HPRD07818
IPIIPI00002445   IPI00103797   
Protein Interaction databases
DIP (DOE-UCLA)Q9H8V8
IntAct (EBI)Q9H8V8
FunCoupENSG00000231160
BioGRIDKLF3-AS1
STRING (EMBL)KLF3-AS1
ZODIACKLF3-AS1
Ontologies - Pathways
QuickGOQ9H8V8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkKLF3-AS1
Atlas of Cancer Signalling NetworkKLF3-AS1
Wikipedia pathwaysKLF3-AS1
Orthology - Evolution
OrthoDB79667
GeneTree (enSembl)ENSG00000231160
Phylogenetic Trees/Animal Genes : TreeFamKLF3-AS1
HOVERGENQ9H8V8
HOGENOMQ9H8V8
Homologs : HomoloGeneKLF3-AS1
Homology/Alignments : Family Browser (UCSC)KLF3-AS1
Gene fusions - Rearrangements
Tumor Fusion PortalKLF3-AS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKLF3-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KLF3-AS1
dbVarKLF3-AS1
ClinVarKLF3-AS1
1000_GenomesKLF3-AS1 
Exome Variant ServerKLF3-AS1
ExAC (Exome Aggregation Consortium)ENSG00000231160
GNOMAD BrowserENSG00000231160
Genetic variants : HAPMAP79667
Genomic Variants (DGV)KLF3-AS1 [DGVbeta]
DECIPHERKLF3-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKLF3-AS1 
Mutations
ICGC Data PortalKLF3-AS1 
TCGA Data PortalKLF3-AS1 
Broad Tumor PortalKLF3-AS1
OASIS PortalKLF3-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDKLF3-AS1
BioMutasearch KLF3-AS1
DgiDB (Drug Gene Interaction Database)KLF3-AS1
DoCM (Curated mutations)KLF3-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KLF3-AS1 (select a term)
intoGenKLF3-AS1
Cancer3DKLF3-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETKLF3-AS1
MedgenKLF3-AS1
Genetic Testing Registry KLF3-AS1
NextProtQ9H8V8 [Medical]
TSGene79667
GENETestsKLF3-AS1
Target ValidationKLF3-AS1
Huge Navigator KLF3-AS1 [HugePedia]
snp3D : Map Gene to Disease79667
BioCentury BCIQKLF3-AS1
ClinGenKLF3-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79667
Chemical/Pharm GKB GenePA128394716
Clinical trialKLF3-AS1
Miscellaneous
canSAR (ICR)KLF3-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKLF3-AS1
EVEXKLF3-AS1
GoPubMedKLF3-AS1
iHOPKLF3-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:10:03 CET 2017

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